HL_8VRL_013

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

8VRL|1|A|G|411, 8VRL|1|A|A|412, 8VRL|1|A|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VRL_013 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.2217

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8VRL|1|A|G|409
8VRL|1|A|U|410
8VRL|1|A|G|411
8VRL|1|A|A|412
8VRL|1|A|G|413
8VRL|1|A|A|414
8VRL|1|A|G|415
8VRL|1|A|C|416
8VRL|1|A|C|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain V

50S ribosomal protein L24