HL_8VRL_015

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

8VRL|1|A|G|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VRL_015 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.1251

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8VRL|1|A|G|498
8VRL|1|A|G|499
8VRL|1|A|A|500
8VRL|1|A|C|501
8VRL|1|A|C|502
8VRL|1|A|A|503
8VRL|1|A|C|504
8VRL|1|A|C|505

Current chains

Chain A

23S ribosomal RNA

Nearby chains