HL_8VRL_047

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUUUACG

Length

7 nucleotides

Bulged bases

8VRL|1|A|U|1946, 8VRL|1|A|C|1949

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VRL_047 not in the Motif Atlas

Geometric match to HL_5WTI_001

Geometric discrepancy: 0.3604

The information below is about HL_5WTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8VRL|1|A|C|1944
8VRL|1|A|U|1945
8VRL|1|A|U|1946
8VRL|1|A|U|1947
8VRL|1|A|A|1948
8VRL|1|A|C|1949
8VRL|1|A|G|1950

Current chains

Chain A

23S ribosomal RNA

Nearby chains