HL_8VRL_062

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UGAGUGGAAG

Length

10 nucleotides

Bulged bases

8VRL|1|A|A|2630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VRL_062 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.129

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8VRL|1|A|U|2628
8VRL|1|A|G|2629
8VRL|1|A|A|2630
8VRL|1|A|G|2631
8VRL|1|A|U|2632
8VRL|1|A|G|2633
8VRL|1|A|G|2634
8VRL|1|A|A|2635
8VRL|1|A|A|2636
8VRL|1|A|G|2637

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15