HL_8VRL_069

3D structure

PDB id

8VRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX and chloramphenicol:50S-HflX-A-Clm

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8VRL|1|A|G|2975, 8VRL|1|A|C|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VRL_069 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1418

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8VRL|1|A|C|2969
8VRL|1|A|U|2970
8VRL|1|A|G|2971
8VRL|1|A|A|2972
8VRL|1|A|A|2973
8VRL|1|A|A|2974
8VRL|1|A|G|2975
8VRL|1|A|C|2976
8VRL|1|A|A|2977
8VRL|1|A|U|2978
8VRL|1|A|C|2979
8VRL|1|A|U|2980
8VRL|1|A|A|2981
8VRL|1|A|A|2982
8VRL|1|A|G|2983

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain f

50S ribosomal protein L36