HL_8VS9_001

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUGAUCAUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_001 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.116

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.5

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8VS9|1|16S|U|12
8VS9|1|16S|U|13
8VS9|1|16S|U|14
8VS9|1|16S|G|15
8VS9|1|16S|A|16
8VS9|1|16S|U|17
8VS9|1|16S|C|18
8VS9|1|16S|A|19
8VS9|1|16S|U|20
8VS9|1|16S|G|21
8VS9|1|16S|G|22

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S05

30S ribosomal protein S5

Chain S12

30S ribosomal protein S12

Chain TMRN

Transfer-messenger RNA; tmRNA; 10Sa RNA; SsrA