RNA 3D Hub //

8VS9 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8VS9_0011/16S/12:22No text annotation
homologous
HL_4LFB_001
HL_73535.1
HL_8VS9_0071/16S/296:301GNRA
homologous
HL_5J7L_007
NA
HL_8VS9_1141/16S/320:333No text annotation
homologous
HL_6CZR_079
NA
HL_8VS9_0081/16S/322:332No text annotation
HL_8VS9_0161/16S/726:731GNRA
homologous
HL_4LFB_016
HL_34789.3
HL_8VS9_0171/16S/786:796No text annotation
homologous
HL_5J7L_017
NA
HL_8VS9_0231/16S/1076:1081GNRA
homologous
HL_5J7L_023
NA
HL_8VS9_0321/23S/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_8VS9_0331/23S/87:95No text annotation
homologous
HL_5J7L_135
NA
HL_8VS9_0341/23S/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.7
HL_8VS9_0371/23S/194:201No text annotation
geometric
HL_4WF9_006
HL_48677.1
HL_8VS9_0421/23S/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_8VS9_0431/23S/410:417Pseudoknot geometry
homologous
HL_5J7L_146
NA
HL_8VS9_0441/23S/462:467GNRA
homologous
HL_4WF9_015
HL_34789.3
HL_8VS9_0451/23S/487:493GNRA
homologous
HL_5J7L_148
NA
HL_8VS9_0471/23S/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
NA
HL_8VS9_0511/23S/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
NA
HL_8VS9_0521/23S/744:753No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_8VS9_0531/23S/779:785UNCG variation
homologous
HL_7A0S_023
HL_51020.2
HL_8VS9_0541/23S/826:831No text annotation
homologous
HL_7A0S_024
HL_27530.1
HL_8VS9_0561/23S/955:962GNRA
homologous
HL_4WF9_027
HL_34789.3
HL_8VS9_0571/23S/978:985No text annotation
homologous
HL_4WF9_028
HL_47171.1
HL_8VS9_0621/23S/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_8VS9_0631/23S/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_8VS9_0641/23S/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_8VS9_1161/23S/1450:1461No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_8VS9_0661/23S/1451:1459Mini UNCG with extended bulge
homologous
HL_5J7L_169
NA
HL_8VS9_0691/23S/1565:1568Mini UNCG
homologous
HL_5J7L_172
NA
HL_8VS9_0701/23S/1612:1619No text annotation
homologous
HL_7A0S_040
HL_28592.2
HL_8VS9_0751/23S/1777:1787No text annotation
homologous
HL_5J7L_178
NA
HL_8VS9_0761/23S/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_8VS9_0781/23S/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_8VS9_0791/23S/1949:1957No text annotation
homologous
HL_5J7L_182
NA
HL_8VS9_0801/23S/2027:2036No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_8VS9_0831/23S/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_8VS9_0841/23S/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_8VS9_0901/23S/2471:2479No text annotation
homologous
HL_4WF9_056
HL_52011.1
HL_8VS9_0911/23S/2528:2535GNRA variation
homologous
HL_5J7L_194
NA
HL_8VS9_0921/23S/2551:2557No text annotation
homologous
HL_5J7L_195
NA
HL_8VS9_0931/23S/2594:2599GNRA
homologous
HL_5J7L_196
NA
HL_8VS9_0961/23S/2745:2759No text annotation
homologous
HL_7RQB_066
NA
HL_8VS9_0981/23S/2819:2827No text annotation
homologous
HL_5J7L_201
NA
HL_8VS9_1011/5S/86:90Mini UNCG
homologous
HL_5J7L_204
NA

Problematic loops

#loop idProblemSequence
HL_8VS9_002No text annotation
HL_8VS9_003No text annotation
HL_8VS9_004GNRA
HL_8VS9_005UNCG variation
HL_8VS9_006GNRA related
HL_8VS9_009UNCG
HL_8VS9_010GNRA
HL_8VS9_011UNCG
HL_8VS9_012GNRA wlth extra near cWW
HL_8VS9_013GNRA
HL_8VS9_014No text annotation
HL_8VS9_015No text annotation
HL_8VS9_018No text annotation
HL_8VS9_019GNRA
HL_8VS9_020GNRA
HL_8VS9_021No text annotation
HL_8VS9_022GNRA
HL_8VS9_024T-loop related
HL_8VS9_025No text annotation
HL_8VS9_026GNRA
HL_8VS9_027GNRA
HL_8VS9_028T-loop with 3 stacked bulged bases
HL_8VS9_029No text annotation
HL_8VS9_030UNCG
HL_8VS9_031GNRA variation
HL_8VS9_035No text annotation
HL_8VS9_036No text annotation
HL_8VS9_038No text annotation
HL_8VS9_039No text annotation
HL_8VS9_040T-loop with 2 stacked bulged bases
HL_8VS9_041T-loop with unstacked turn
HL_8VS9_046Externally structured
HL_8VS9_048No text annotation
HL_8VS9_049GNRA
HL_8VS9_050No text annotation
HL_8VS9_055No text annotation
HL_8VS9_119No text annotation
HL_8VS9_058No text annotation
HL_8VS9_059No text annotation
HL_8VS9_060No text annotation
HL_8VS9_115No text annotation
HL_8VS9_120No text annotation
HL_8VS9_061GNRA
HL_8VS9_065No text annotation
HL_8VS9_067Pseudoknot geometry with 3' bulge
HL_8VS9_068UNCG
HL_8VS9_071GNRA
HL_8VS9_072No text annotation
HL_8VS9_073UNCG variation
HL_8VS9_074No text annotation
HL_8VS9_077GNRA variation
HL_8VS9_081No text annotation
HL_8VS9_082No text annotation
HL_8VS9_085No text annotation
HL_8VS9_086Pseudoknot geometry
HL_8VS9_087GNRA
HL_8VS9_088GNRA
HL_8VS9_089No text annotation
HL_8VS9_094GNRA
HL_8VS9_095Ribsomal LSU H95
HL_8VS9_097UNCG variation
HL_8VS9_099GNRA
HL_8VS9_100No text annotation
HL_8VS9_102tRNA D-loop
HL_8VS9_103tRNA anticodon loop
HL_8VS9_104T-loop with 2 stacked bulged bases
HL_8VS9_105tRNA D-loop
HL_8VS9_117No text annotation
HL_8VS9_106tRNA anticodon loop
HL_8VS9_107T-loop with 2 stacked bulged bases
HL_8VS9_108No text annotation
HL_8VS9_109tRNA D-loop
HL_8VS9_121No text annotation
HL_8VS9_118No text annotation
HL_8VS9_110No text annotation
HL_8VS9_111No text annotation
HL_8VS9_112No text annotation
HL_8VS9_113T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8VS9_0011/16S/30:32,
1/16S/552:553		Single bulged G
homologous
IL_5J7L_001
NA
IL_8VS9_0171/16S/242:247,
1/16S/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_8VS9_0321/16S/515:521,
1/16S/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_8VS9_0331/16S/569:575,
1/16S/880:881		No text annotation
homologous
IL_6CZR_134
NA
IL_8VS9_0341/16S/580:584,
1/16S/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_8VS9_0421/16S/662:666,
1/16S/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_8VS9_2181/16S/673:677,
1/16S/713:717		Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_71154.3
IL_8VS9_0441/16S/684:688,
1/16S/699:706		Kink-turn
homologous
IL_5J7L_035
NA
IL_8VS9_0451/16S/774:778,
1/16S/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.3
IL_8VS9_0461/16S/779:783,
1/16S/799:803		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_05821.1
IL_8VS9_0471/16S/887:894,
1/16S/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_8VS9_0481/16S/922:923,
1/16S/1393:1395		Single bulged A
homologous
IL_5J7L_039
NA
IL_8VS9_0491/16S/925:927,
1/16S/1390:1391		Single bulged G
homologous
IL_4LFB_036
IL_28408.2
IL_8VS9_0581/16S/1057:1058,
1/16S/1199:1203		Minor groove platform
homologous
IL_5J7L_048
NA
IL_8VS9_0591/16S/1060:1061,
1/16S/1195:1197		Single bulged A
homologous
IL_5J7L_049
NA
IL_8VS9_0691/16S/1399:1401,
1/16S/1501:1504		No text annotation
geometric
IL_5J7L_058
NA
IL_8VS9_0711/16S/1405:1407,
1/16S/1494:1496		Isolated non-canonical cWW pair
geometric
IL_3GM7_004
IL_01003.3
IL_8VS9_0721/16S/1407:1409,
1/16S/1491:1494		Decoding loop related
geometric
IL_3C3Z_002
IL_53541.1
IL_8VS9_0731/16S/1412:1414,
1/16S/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_8VS9_0781/23S/24:30,
1/23S/510:516		Triple sheared with non-canonical cWW
homologous
IL_7A0S_001
IL_22311.1
IL_8VS9_0791/23S/36:37,
1/23S/442:444		Single bulged A
homologous
IL_7A0S_002
IL_14190.2
IL_8VS9_0821/23S/183:184,
1/23S/212:214		Single stack bend
homologous
IL_5J7L_249
NA
IL_8VS9_0841/23S/239:245,
1/23S/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_8VS9_0891/23S/481:484,
1/23S/496:509		No text annotation
homologous
IL_5J7L_255
NA
IL_8VS9_0911/23S/564:566,
1/23S/575:577		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
NA
IL_8VS9_0931/23S/672:674,
1/23S/806:808		No text annotation
homologous
IL_7RQB_017
NA
IL_8VS9_0941/23S/674:678,
1/23S/799:806		tHW-tHW cross-strand stack
geometric
IL_5J7L_260
NA
IL_8VS9_0951/23S/697:698,
1/23S/763:765		Single bulged A
homologous
IL_5J7L_261
NA
IL_8VS9_0961/23S/702:703,
1/23S/728:730		Single bulged G
homologous
IL_5J7L_262
NA
IL_8VS9_0981/23S/738:740,
1/23S/757:758		Major groove platform
homologous
IL_5J7L_264
NA
IL_8VS9_0991/23S/775:777,
1/23S/787:791		Multiple bulged bases
homologous
IL_5J7L_265
NA
IL_8VS9_1031/23S/850:851,
1/23S/926:928		Single stack bend
homologous
IL_5J7L_269
NA
IL_8VS9_1061/23S/864:868,
1/23S/909:912		C-loop
homologous
IL_7RQB_029
NA
IL_8VS9_1111/23S/998:1002,
1/23S/1153:1157		UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_8VS9_1131/23S/1011:1013,
1/23S/1149:1150		Single bulged U
homologous
IL_5J7L_279
NA
IL_8VS9_1151/23S/1024:1030,
1/23S/1124:1140		No text annotation
geometric
IL_5J7L_281
NA
IL_8VS9_1211/23S/1196:1198,
1/23S/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
NA
IL_8VS9_1231/23S/1208:1215,
1/23S/1234:1238		Kink-turn
homologous
IL_5J7L_288
NA
IL_8VS9_1241/23S/1262:1269,
1/23S/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_8VS9_1251/23S/1310:1313,
1/23S/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_8VS9_1261/23S/1319:1323,
1/23S/1331:1333		C-loop
homologous
IL_5J7L_291
NA
IL_8VS9_1271/23S/1351:1355,
1/23S/1376:1380		UAA/GAN
homologous
IL_5J7L_292
NA
IL_8VS9_1311/23S/1432:1435,
1/23S/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_8VS9_1351/23S/1474:1478,
1/23S/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
NA
IL_8VS9_1371/23S/1489:1491,
1/23S/1499:1500		Single bulged A
homologous
IL_5J7L_302
NA
IL_8VS9_1401/23S/1651:1656,
1/23S/2004:2006		No text annotation
homologous
IL_5J7L_304
NA
IL_8VS9_1411/23S/1663:1665,
1/23S/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_8VS9_1421/23S/1666:1669,
1/23S/1993:1994		Major groove platform; stack outside cWW
homologous
IL_4WF9_064
IL_74641.2
IL_8VS9_2261/23S/1666:1674,
1/23S/1990:1994		No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_8VS9_1431/23S/1669:1674,
1/23S/1990:1993		Intercalated tWH
geometric
IL_4WF9_065
IL_28217.1
IL_8VS9_1441/23S/1686:1691,
1/23S/1696:1702		tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
NA
IL_8VS9_1481/23S/1770:1771,
1/23S/1980:1982		Single bulged A
homologous
IL_7A0S_064
IL_14190.2
IL_8VS9_1491/23S/1798:1804,
1/23S/1813:1821		Kink-turn related
homologous
IL_5J7L_313
NA
IL_8VS9_1501/23S/1837:1840,
1/23S/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_8VS9_1531/23S/1864:1867,
1/23S/1874:1878		UAA/GAN related
homologous
IL_5J7L_317
NA
IL_8VS9_1561/23S/1934:1945,
1/23S/1961:1964		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_8VS9_1581/23S/2054:2056,
1/23S/2612:2615		No text annotation
homologous
IL_4WF9_079
IL_80025.1
IL_8VS9_1591/23S/2067:2069,
1/23S/2442:2443		Single bulged U
homologous
IL_7RQB_080
NA
IL_8VS9_1601/23S/2070:2071,
1/23S/2438:2441		Minor groove platform
homologous
IL_7RQB_081
NA
IL_8VS9_1621/23S/2081:2083,
1/23S/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_8VS9_1721/23S/2202:2204,
1/23S/2220:2221		Single bulged U
homologous
IL_5J7L_331
NA
IL_8VS9_1761/23S/2453:2454,
1/23S/2498:2500		Single stack bend
geometric
IL_4WF9_089
IL_15011.2
IL_8VS9_1781/23S/2457:2459,
1/23S/2493:2494		Major groove platform
homologous
IL_4WF9_091
IL_48076.8
IL_8VS9_2291/23S/2457:2461,
1/23S/2489:2494		No text annotation
IL_8VS9_1821/23S/2510:2512,
1/23S/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_4WF9_095
IL_68118.3
IL_8VS9_1831/23S/2512:2513,
1/23S/2571:2574		No text annotation
geometric
IL_5J7L_341
NA
IL_8VS9_1841/23S/2522:2523,
1/23S/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_8VS9_1861/23S/2636:2640,
1/23S/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
NA
IL_8VS9_1881/23S/2680:2684,
1/23S/2725:2727		C-loop
homologous
IL_5J7L_347
NA
IL_8VS9_1891/23S/2687:2691,
1/23S/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_8VS9_1901/23S/2695:2696,
1/23S/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
NA

Problematic loops

#loop idProblemSequence
IL_8VS9_002Single bulged A
IL_8VS9_003No text annotation
IL_8VS9_004Minor groove platform
IL_8VS9_234Multiple bulged bases
IL_8VS9_005Isolated non-canonical cWW pair
IL_8VS9_214No text annotation
IL_8VS9_006Minor groove platform with extra cWW
IL_8VS9_007Minor groove platform
IL_8VS9_235Single bulged G
IL_8VS9_008Tandem non-canonical cWW pairs
IL_8VS9_009No text annotation
IL_8VS9_010Isolated non-canonical cWW pair
IL_8VS9_011Minor groove platform related
IL_8VS9_012Isolated cWH basepair
IL_8VS9_013Isolated cWH basepair
IL_8VS9_014tWH-tWH-tHW-tHW
IL_8VS9_015Isolated cWS basepair
IL_8VS9_016Minor groove platform
IL_8VS9_018No text annotation
IL_8VS9_019C-loop
IL_8VS9_020Single stack bend
IL_8VS9_021Single bulged U
IL_8VS9_022C-loop
IL_8VS9_023Single bulged G
IL_8VS9_024Isolated non-canonical cWW pair
IL_8VS9_025No text annotation
IL_8VS9_215No text annotation
IL_8VS9_026Isolated non-canonical cWW pair
IL_8VS9_027No text annotation
IL_8VS9_028tSH-tHW-tWW
IL_8VS9_029No text annotation
IL_8VS9_030Tandem non-canonical cWW pairs
IL_8VS9_031SSU/LSU pseudoknot
IL_8VS9_035Isolated non-canonical cWW pair
IL_8VS9_216No text annotation
IL_8VS9_036Major groove platform
IL_8VS9_037Major groove minor groove platform; mini C-loop
IL_8VS9_038No text annotation
IL_8VS9_039Isolated non-canonical cWW pair
IL_8VS9_040Major groove platform; stack outside cWW
IL_8VS9_041Single stack bend
IL_8VS9_217No text annotation
IL_8VS9_043No text annotation
IL_8VS9_2199x7 Sarcin-Ricin with inserted C; G-bulge
IL_8VS9_050No text annotation
IL_8VS9_051Minor groove platform
IL_8VS9_052No text annotation
IL_8VS9_053Minor groove platform
IL_8VS9_054Single stack bend
IL_8VS9_055No text annotation
IL_8VS9_056Single bulged U
IL_8VS9_057Tandem non-canonical cWW pairs
IL_8VS9_220Isolated cWS basepair
IL_8VS9_060Isolated non-canonical cWW pair
IL_8VS9_061No text annotation
IL_8VS9_062No text annotation
IL_8VS9_063Minor groove platform
IL_8VS9_064No text annotation
IL_8VS9_065No text annotation
IL_8VS9_066180 degree turn
IL_8VS9_067Double sheared with non-canonical cWW
IL_8VS9_221No text annotation
IL_8VS9_068No text annotation
IL_8VS9_070No text annotation
IL_8VS9_074Double sheared
IL_8VS9_075Triple sheared related
IL_8VS9_076Single bulged A
IL_8VS9_222No text annotation
IL_8VS9_077No text annotation
IL_8VS9_080Minor groove platform
IL_8VS9_081No text annotation
IL_8VS9_0838x7 Sarcin-Ricin; G-bulge
IL_8VS9_085No text annotation
IL_8VS9_086No text annotation
IL_8VS9_087No text annotation
IL_8VS9_088Isolated non-canonical cWW pair
IL_8VS9_090Double sheared
IL_8VS9_092No text annotation
IL_8VS9_223AAA cross-strand stack
IL_8VS9_097Triple sheared
IL_8VS9_100Single stack bend
IL_8VS9_10190 degree turn
IL_8VS9_224No text annotation
IL_8VS9_102Stack outside cWW
IL_8VS9_1047x7 Sarcin-Ricin with intercalated A; G-bulge
IL_8VS9_105Multiple bulged bases
IL_8VS9_107Isolated non-canonical cWW pair
IL_8VS9_108Double sheared with non-canonical cWW
IL_8VS9_225No text annotation
IL_8VS9_109No text annotation
IL_8VS9_236Minor groove platform
IL_8VS9_110Single bulged C
IL_8VS9_112SSU/LSU pseudoknot
IL_8VS9_114Kink-turn related
IL_8VS9_116Isolated non-canonical cWW pair
IL_8VS9_117Tandem non-canonical cWW pairs
IL_8VS9_118Kink-turn
IL_8VS9_119No text annotation
IL_8VS9_120Major groove platform
IL_8VS9_122No text annotation
IL_8VS9_128tSH-tHW-tHS
IL_8VS9_129No text annotation
IL_8VS9_130UAA/GAN
IL_8VS9_132tSH-tHW
IL_8VS9_133Single bulged U
IL_8VS9_237No text annotation
IL_8VS9_134No text annotation
IL_8VS9_136180 degree turn
IL_8VS9_138UAA/GAN variation
IL_8VS9_139No text annotation
IL_8VS9_1456x5 Sarcin-Ricin; G-bulge
IL_8VS9_146Triple sheared
IL_8VS9_147Isolated non-canonical cWW pair
IL_8VS9_227Isolated non-canonical cWW pair
IL_8VS9_151Major groove intercalation
IL_8VS9_152Major groove minor groove platform; mini C-loop
IL_8VS9_228No text annotation
IL_8VS9_154Isolated non-canonical cWW pair
IL_8VS9_155Bulged stacked bases
IL_8VS9_157Major groove platform
IL_8VS9_161No text annotation
IL_8VS9_163Isolated non-canonical cWW pair
IL_8VS9_164Isolated non-canonical cWW pair
IL_8VS9_165Isolated non-canonical cWW pair
IL_8VS9_166Tandem non-canonical cWW pairs
IL_8VS9_167No text annotation
IL_8VS9_168No text annotation
IL_8VS9_169No text annotation
IL_8VS9_170No text annotation
IL_8VS9_171Double sheared
IL_8VS9_173Isolated non-canonical cWW pair
IL_8VS9_174Double sheared
IL_8VS9_175No text annotation
IL_8VS9_177Major groove platform
IL_8VS9_179Major groove minor groove platform with extra cWW
IL_8VS9_230Single stack bend
IL_8VS9_180Double sheared with non-canonical cWW
IL_8VS9_231UAA/GAN related
IL_8VS9_181Major groove platform
IL_8VS9_185Single bulged A
IL_8VS9_187Sarcin-Ricin target in LSU H95; G-bulge
IL_8VS9_191UAA/GAN with extra cWW
IL_8VS9_192No text annotation
IL_8VS9_193Major groove intercalation
IL_8VS9_194Multiple bulged bases with non-canonical cWW
IL_8VS9_195tHS double platform
IL_8VS9_196Major groove intercalation
IL_8VS9_197No text annotation
IL_8VS9_198Major groove minor groove platform; mini C-loop
IL_8VS9_199Symmetric double minor groove platform
IL_8VS9_200Bacterial 5S Loop E
IL_8VS9_201Isolated non-canonical cWW pair
IL_8VS9_202No text annotation
IL_8VS9_203No text annotation
IL_8VS9_238No text annotation
IL_8VS9_204No text annotation
IL_8VS9_205No text annotation
IL_8VS9_206Isolated non-canonical cWW pair
IL_8VS9_207Isolated non-canonical cWW pair
IL_8VS9_208Isolated tHS basepair with bulges
IL_8VS9_209No text annotation
IL_8VS9_210No text annotation
IL_8VS9_211No text annotation
IL_8VS9_232No text annotation
IL_8VS9_212No text annotation
IL_8VS9_233No text annotation
IL_8VS9_213No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8VS9_0011/16S/826:829,
1/16S/857:861,
1/16S/868:874		No text annotation
homologous
J3_5J7L_004
NA
J3_8VS9_0041/16S/955:962,
1/16S/973:984,
1/16S/1221:1225		No text annotation
homologous
J3_5J7L_006
NA
J3_8VS9_0051/16S/990:993,
1/16S/1045:1047,
1/16S/1210:1215		No text annotation
homologous
J3_5J7L_007
NA
J3_8VS9_0241/16S/990:997,
1/16S/1044:1047,
1/16S/1210:1215		No text annotation
homologous
J3_5J7L_053
NA
J3_8VS9_0061/16S/1063:1068,
1/16S/1107:1113,
1/16S/1187:1193		No text annotation
homologous
J3_4LFB_007
J3_01343.1
J3_8VS9_0251/16S/1073:1074,
1/16S/1083:1086,
1/16S/1099:1102		No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_8VS9_0281/23S/30:31,
1/23S/474:481,
1/23S/509:510		No text annotation
geometric
J3_5J7L_036
NA
J3_8VS9_0291/23S/30:31,
1/23S/474:484,
1/23S/496:510		No text annotation
homologous
J3_9DFE_002
J3_17917.1
J3_8VS9_0301/23S/32:35,
1/23S/445:461,
1/23S/468:473		No text annotation
homologous
J3_5J7L_067
NA
J3_8VS9_0321/23S/297:301,
1/23S/316:325,
1/23S/337:341		No text annotation
homologous
J3_5J7L_068
NA
J3_8VS9_0091/23S/683:689,
1/23S/773:775,
1/23S/791:794		No text annotation
homologous
J3_5J7L_038
NA
J3_8VS9_0101/23S/698:700,
1/23S/732:736,
1/23S/760:763		No text annotation
homologous
J3_4WF9_003
J3_69816.1
J3_8VS9_0111/23S/1055:1058,
1/23S/1080:1087,
1/23S/1102:1104		No text annotation
J3_8VS9_0401/23S/1055:1057,
1/23S/1081:1090,
1/23S/1101:1104		No text annotation
J3_8VS9_0121/23S/1298:1303,
1/23S/1625:1627,
1/23S/1639:1642		No text annotation
homologous
J3_5J7L_041
NA
J3_8VS9_0131/23S/1306:1309,
1/23S/1605:1611,
1/23S/1620:1622		No text annotation
homologous
J3_5J7L_042
NA
J3_8VS9_0341/23S/1344:1349,
1/23S/1382:1385,
1/23S/1402:1403		No text annotation
homologous
J3_5J7L_043
NA
J3_8VS9_0351/23S/1424:1429,
1/23S/1564:1565,
1/23S/1568:1574		No text annotation
homologous
J3_9DFE_013
J3_34864.3
J3_8VS9_0141/23S/2091:2093,
1/23S/2196:2200,
1/23S/2223:2228		Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_8VS9_0361/23S/2282:2284,
1/23S/2384:2395,
1/23S/2421:2427		No text annotation
homologous
J3_5J7L_070
NA
J3_8VS9_0151/23S/2295:2299,
1/23S/2317:2323,
1/23S/2332:2337		No text annotation
homologous
J3_5J7L_071
NA
J3_8VS9_0161/23S/2517:2520,
1/23S/2545:2547,
1/23S/2561:2567		No text annotation
homologous
J3_5J7L_046
NA
J3_8VS9_0181/5S/10:16,
1/5S/68:70,
1/5S/106:110		No text annotation
homologous
J3_5J7L_049
NA
J4_8VS9_0011/16S/115:122,
1/16S/239:240,
1/16S/286:289,
1/16S/311:312		No text annotation
homologous
J4_5J7L_001
NA
J4_8VS9_0031/16S/575:577,
1/16S/764:769,
1/16S/810:821,
1/16S/879:880		No text annotation
homologous
J4_5J7L_003
NA
J4_8VS9_0041/23S/268:269,
1/23S/370:375,
1/23S/399:406,
1/23S/421:424		No text annotation
homologous
J4_5J7L_018
NA
J4_8VS9_0051/23S/601:604,
1/23S/624:628,
1/23S/635:638,
1/23S/650:656		No text annotation
homologous
J4_5J7L_020
NA
J4_8VS9_0061/23S/1270:1276,
1/23S/1294:1295,
1/23S/1645:1648,
1/23S/2009:2010		No text annotation
homologous
J4_5J7L_021
NA
J4_8VS9_0071/23S/1310:1314,
1/23S/1338:1343,
1/23S/1404:1405,
1/23S/1597:1604		No text annotation
homologous
J4_5J7L_022
NA
J4_8VS9_0081/23S/1313:1314,
1/23S/1338:1343,
1/23S/1404:1405,
1/23S/1597:1603		No text annotation
homologous
J4_5J7L_023
NA
J4_8VS9_0101/23S/1772:1776,
1/23S/1788:1792,
1/23S/1827:1830,
1/23S/1975:1979		No text annotation
homologous
J4_5J7L_025
NA
J4_8VS9_0111/23S/1833:1835,
1/23S/1905:1906,
1/23S/1924:1933,
1/23S/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_8VS9_0121/23S/2285:2289,
1/23S/2343:2347,
1/23S/2370:2372,
1/23S/2381:2383		No text annotation
homologous
J4_5J7L_027
NA
J5_8VS9_0111/16S/58:61,
1/16S/106:113,
1/16S/314:316,
1/16S/337:339,
1/16S/350:354		No text annotation
homologous
J5_4LFB_002
J5_58574.1
J5_8VS9_0041/23S/47:54,
1/23S/116:121,
1/23S/130:131,
1/23S/148:150,
1/23S/176:178		No text annotation
homologous
J5_5J7L_013
NA
J5_8VS9_0051/23S/531:533,
1/23S/560:564,
1/23S/577:579,
1/23S/1261:1262,
1/23S/2017:2018		No text annotation
homologous
J5_5J7L_014
NA
J5_8VS9_0061/23S/584:589,
1/23S/668:671,
1/23S/809:812,
1/23S/1195:1196,
1/23S/1250:1256		No text annotation
homologous
J5_5J7L_015
NA
J5_8VS9_0071/23S/1674:1682,
1/23S/1706:1707,
1/23S/1751:1752,
1/23S/1756:1764,
1/23S/1988:1990		No text annotation
homologous
J5_5J7L_016
NA
J5_8VS9_0081/23S/2057:2064,
1/23S/2446:2453,
1/23S/2500:2507,
1/23S/2582:2588,
1/23S/2606:2611		No text annotation
J5_8VS9_0091/23S/2074:2077,
1/23S/2243:2246,
1/23S/2258:2259,
1/23S/2281:2282,
1/23S/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J5_8VS9_0101/TMRN/48:108,
1/TMRN/137:139,
1/TMRN/180:200,
1/TMRN/229:252,
1/TMRN/279:303		No text annotation
J5_8VS9_0121/TMRN/48:108,
1/TMRN/137:138,
1/TMRN/181:200,
1/TMRN/229:252,
1/TMRN/279:303		No text annotation
J6_8VS9_0011/23S/45:46,
1/23S/179:183,
1/23S/214:224,
1/23S/231:235,
1/23S/262:266,
1/23S/426:433		No text annotation
J6_8VS9_0021/23S/2074:2077,
1/23S/2243:2246,
1/23S/2258:2259,
1/23S/2281:2284,
1/23S/2384:2395,
1/23S/2421:2435		No text annotation
J6_8VS9_0041/TMRN/48:52,
1/TMRN/63:108,
1/TMRN/137:138,
1/TMRN/181:200,
1/TMRN/229:252,
1/TMRN/279:303		No text annotation
J7_8VS9_0011/23S/8:15,
1/23S/525:531,
1/23S/2018:2023,
1/23S/2040:2043,
1/23S/2625:2630,
1/23S/2788:2789,
1/23S/2894:2895		No text annotation
J7_8VS9_0021/23S/817:822,
1/23S/835:837,
1/23S/942:946,
1/23S/971:976,
1/23S/987:991,
1/23S/1163:1164,
1/23S/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_8VS9_019No text annotation
J3_8VS9_020No text annotation
J3_8VS9_021No text annotation
J3_8VS9_022No text annotation
J3_8VS9_023No text annotation
J3_8VS9_002No text annotation
J3_8VS9_003No text annotation
J3_8VS9_026No text annotation
J3_8VS9_027No text annotation
J3_8VS9_007No text annotation
J3_8VS9_039No text annotation
J3_8VS9_008No text annotation
J3_8VS9_031No text annotation
J3_8VS9_033No text annotation
J3_8VS9_037No text annotation
J3_8VS9_017No text annotation
J3_8VS9_041No text annotation
J3_8VS9_038No text annotation
J4_8VS9_002No text annotation
J4_8VS9_009No text annotation
J4_8VS9_013No text annotation
J4_8VS9_014tRNA junction
J4_8VS9_016tRNA junction
J4_8VS9_015tRNA junction
J5_8VS9_001No text annotation
J5_8VS9_002No text annotation
J5_8VS9_003No text annotation
J6_8VS9_003No text annotation

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