RNA 3D Hub //

8VS9 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8VS9_0011/16S/12:22No text annotation
homologous
HL_4LFB_001
HL_89881.5
HL_8VS9_0021/16S/82:87No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_8VS9_0031/16S/158:163No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_8VS9_0041/16S/186:191GNRA
homologous
HL_5J7L_004
HL_37824.7
HL_8VS9_0051/16S/207:212UNCG variation
geometric
HL_2CZJ_007
NA
HL_8VS9_0061/16S/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_8VS9_0071/16S/296:301GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_8VS9_1141/16S/320:333No text annotation
homologous
HL_6CZR_079
NA
HL_8VS9_0081/16S/322:332No text annotation
HL_8VS9_0091/16S/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_8VS9_0101/16S/379:384GNRA
homologous
HL_5J7L_010
HL_37824.7
HL_8VS9_0111/16S/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_8VS9_0121/16S/462:470GNRA related
geometric
HL_5J7L_012
HL_81538.2
HL_8VS9_0131/16S/522:527GNRA
geometric
HL_3PDR_001
HL_37824.7
HL_8VS9_0141/16S/617:623No text annotation
homologous
HL_6CZR_085
NA
HL_8VS9_0151/16S/689:698No text annotation
homologous
HL_5J7L_015
HL_75293.5
HL_8VS9_0161/16S/726:731GNRA
homologous
HL_4LFB_016
HL_37824.7
HL_8VS9_0171/16S/786:796No text annotation
homologous
HL_5J7L_017
HL_75293.5
HL_8VS9_0181/16S/840:846No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_8VS9_0191/16S/862:867GNRA
homologous
HL_5J7L_019
HL_37824.7
HL_8VS9_0201/16S/897:902GNRA
homologous
HL_5J7L_020
HL_37824.7
HL_8VS9_0211/16S/963:972No text annotation
homologous
HL_5J7L_021
HL_50779.4
HL_8VS9_0221/16S/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_8VS9_0231/16S/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.7
HL_8VS9_0241/16S/1089:1096T-loop related
homologous
HL_5J7L_024
HL_77436.5
HL_8VS9_0251/16S/1134:1140No text annotation
homologous
HL_6CZR_097
NA
HL_8VS9_0261/16S/1165:1171GNRA
homologous
HL_5J7L_026
HL_93535.1
HL_8VS9_0271/16S/1265:1270GNRA
homologous
HL_5J7L_027
HL_37824.7
HL_8VS9_0281/16S/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_8VS9_0291/16S/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_8VS9_0301/16S/1449:1454UNCG
homologous
HL_5J7L_030
HL_34617.5
HL_8VS9_0311/16S/1515:1520GNRA variation
geometric
HL_4V88_222
NA
HL_8VS9_0321/23S/59:68No text annotation
homologous
HL_5J7L_134
HL_35677.3
HL_8VS9_0331/23S/87:95No text annotation
homologous
HL_5J7L_135
HL_80241.1
HL_8VS9_0341/23S/123:128No text annotation
homologous
HL_4WF9_003
HL_75660.5
HL_8VS9_0351/23S/136:143No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_8VS9_0361/23S/158:168No text annotation
homologous
HL_5J7L_138
HL_68257.1
HL_8VS9_0371/23S/194:201No text annotation
geometric
HL_4WF9_006
HL_30068.2
HL_8VS9_0381/23S/225:230No text annotation
homologous
HL_5J7L_140
HL_62934.1
HL_8VS9_0391/23S/246:252No text annotation
homologous
HL_7A0S_008
HL_37369.2
HL_8VS9_0401/23S/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
HL_01609.3
HL_8VS9_0411/23S/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
HL_27670.2
HL_8VS9_0421/23S/382:392No text annotation
homologous
HL_5J7L_145
HL_91503.7
HL_8VS9_0431/23S/410:417Pseudoknot geometry
homologous
HL_5J7L_146
HL_30680.3
HL_8VS9_0441/23S/462:467GNRA
homologous
HL_4WF9_015
HL_37824.7
HL_8VS9_0451/23S/487:493GNRA
homologous
HL_5J7L_148
HL_37824.7
HL_8VS9_0461/23S/544:549Externally structured
geometric
HL_8C3A_022
NA
HL_8VS9_0471/23S/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
HL_28252.6
HL_8VS9_0481/23S/611:617No text annotation
homologous
HL_5J7L_151
HL_80922.2
HL_8VS9_0491/23S/629:634GNRA
homologous
HL_5J7L_152
HL_37824.7
HL_8VS9_0501/23S/641:647No text annotation
homologous
HL_5J7L_153
HL_13529.1
HL_8VS9_0511/23S/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
HL_81538.2
HL_8VS9_0521/23S/744:753No text annotation
homologous
HL_4WF9_023
HL_88205.2
HL_8VS9_0531/23S/779:785No text annotation
homologous
HL_7A0S_023
HL_53890.2
HL_8VS9_0541/23S/826:831No text annotation
homologous
HL_7A0S_024
HL_55195.3
HL_8VS9_1191/23S/884:892No text annotation
HL_8VS9_0561/23S/955:962GNRA
homologous
HL_4WF9_027
HL_37824.7
HL_8VS9_0571/23S/978:985No text annotation
homologous
HL_4WF9_028
HL_42998.2
HL_8VS9_0581/23S/1064:1074No text annotation
geometric
HL_4KR9_003
HL_70782.2
HL_8VS9_0591/23S/1092:1099No text annotation
homologous
HL_7RQB_030
NA
HL_8VS9_1201/23S/1171:1178No text annotation
HL_8VS9_0611/23S/1222:1227GNRA
homologous
HL_5J7L_164
HL_37824.7
HL_8VS9_0621/23S/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
HL_28252.6
HL_8VS9_0631/23S/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
HL_57176.2
HL_8VS9_0641/23S/1363:1368GNRA
homologous
HL_5J7L_167
HL_37824.7
HL_8VS9_0651/23S/1389:1398No text annotation
homologous
HL_7RQB_036
NA
HL_8VS9_1161/23S/1450:1461No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_8VS9_0661/23S/1451:1459Mini UNCG with extended bulge
homologous
HL_5J7L_169
HL_22622.1
HL_8VS9_0671/23S/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
HL_57176.2
HL_8VS9_0681/23S/1533:1538UNCG
homologous
HL_5J7L_171
HL_34617.5
HL_8VS9_0691/23S/1565:1568Mini UNCG
homologous
HL_5J7L_172
HL_48778.2
HL_8VS9_0701/23S/1612:1619No text annotation
homologous
HL_7A0S_040
HL_89567.2
HL_8VS9_0711/23S/1630:1636GNRA
homologous
HL_5J7L_174
HL_37824.7
HL_8VS9_0721/23S/1691:1696No text annotation
geometric
HL_7RQB_042
NA
HL_8VS9_0731/23S/1727:1733No text annotation
geometric
HL_7A0S_023
HL_53890.2
HL_8VS9_0741/23S/1752:1756No text annotation
homologous
HL_5J7L_177
HL_80709.3
HL_8VS9_0751/23S/1777:1787No text annotation
homologous
HL_5J7L_178
HL_01962.2
HL_8VS9_0761/23S/1806:1811GNRA related
homologous
HL_5J7L_179
HL_04783.2
HL_8VS9_0771/23S/1868:1873GNRA variation
homologous
HL_5J7L_180
HL_37824.7
HL_8VS9_0781/23S/1910:1920No text annotation
geometric
HL_5TBW_049
NA
HL_8VS9_0791/23S/1949:1957No text annotation
homologous
HL_5J7L_182
HL_20167.2
HL_8VS9_0801/23S/2027:2036No text annotation
homologous
HL_4WF9_047
HL_61996.2
HL_8VS9_0811/23S/2142:2149No text annotation
geometric
HL_2ZZM_002
HL_13963.3
HL_8VS9_0821/23S/2209:2215No text annotation
homologous
HL_5J7L_185
HL_49922.4
HL_8VS9_0831/23S/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_8VS9_0841/23S/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_8VS9_0851/23S/2303:2313No text annotation
homologous
HL_5J7L_188
NA
HL_8VS9_0861/23S/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
HL_93324.4
HL_8VS9_0871/23S/2356:2361GNRA
homologous
HL_5J7L_190
HL_37824.7
HL_8VS9_0881/23S/2374:2379GNRA
homologous
HL_4WF9_054
HL_37824.7
HL_8VS9_0891/23S/2404:2413No text annotation
homologous
HL_5J7L_192
HL_53454.2
HL_8VS9_0901/23S/2471:2479No text annotation
homologous
HL_4WF9_056
HL_32735.2
HL_8VS9_0911/23S/2528:2535No text annotation
homologous
HL_5J7L_194
HL_31585.3
HL_8VS9_0921/23S/2551:2557No text annotation
homologous
HL_5J7L_195
HL_30068.2
HL_8VS9_0931/23S/2594:2599GNRA
homologous
HL_5J7L_196
HL_37824.7
HL_8VS9_0941/23S/2658:2663GNRA
homologous
HL_7A0S_063
HL_37824.7
HL_8VS9_0951/23S/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
HL_65794.5
HL_8VS9_0961/23S/2745:2759No text annotation
homologous
HL_7RQB_066
NA
HL_8VS9_0971/23S/2795:2801Other HL
homologous
HL_5J7L_200
HL_08100.1
HL_8VS9_0981/23S/2819:2827No text annotation
homologous
HL_5J7L_201
HL_64690.6
HL_8VS9_0991/23S/2856:2861GNRA
homologous
HL_7A0S_068
HL_37824.7
HL_8VS9_1001/5S/38:44No text annotation
geometric
HL_5NFV_001
HL_69752.2
HL_8VS9_1011/5S/86:90Mini UNCG
homologous
HL_5J7L_204
HL_48778.2
HL_8VS9_1021/ATRN/13:22tRNA D-loop
homologous
HL_4V90_032
HL_20811.4
HL_8VS9_1031/ATRN/31:39tRNA anticodon loop
homologous
HL_4YCO_002
HL_06059.5
HL_8VS9_1041/ATRN/53:61T-loop with 2 stacked bulged bases
homologous
HL_4V90_034
HL_28252.6
HL_8VS9_1051/ETRN/13:22tRNA D-loop
homologous
HL_5B63_003
HL_20811.4
HL_8VS9_1061/ETRN/31:39tRNA anticodon loop
homologous
HL_1H3E_002
HL_77082.1
HL_8VS9_1071/ETRN/53:61T-loop with 2 stacked bulged bases
homologous
HL_3ZGZ_003
HL_28252.6
HL_8VS9_1081/TMRN/52:63No text annotation
HL_8VS9_1211/TMRN/117:127No text annotation
HL_8VS9_1181/TMRN/147:168No text annotation
HL_8VS9_1101/TMRN/152:163No text annotation
geometric
HL_2A64_006
HL_38649.1
HL_8VS9_1111/TMRN/210:219No text annotation
HL_8VS9_1121/TMRN/259:272No text annotation
HL_8VS9_1131/TMRN/340:348T-loop with 2 stacked bulged bases
homologous
HL_4V8Q_110
HL_28252.6

Problematic loops

#loop idProblemSequence
HL_8VS9_055No text annotation
HL_8VS9_060No text annotation
HL_8VS9_115No text annotation
HL_8VS9_117No text annotation
HL_8VS9_109tRNA D-loop

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8VS9_0011/16S/30:32,
1/16S/552:553		Single bulged G
homologous
IL_5J7L_001
IL_00225.13
IL_8VS9_0021/16S/44:45,
1/16S/396:398		Single bulged A
homologous
IL_5J7L_002
IL_31462.5
IL_8VS9_0031/16S/47:52,
1/16S/359:361		No text annotation
homologous
IL_5J7L_003
IL_14177.2
IL_8VS9_0041/16S/54:56,
1/16S/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_51454.2
IL_8VS9_2341/16S/63:66,
1/16S/103:104		Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_8VS9_0061/16S/67:69,
1/16S/99:102		Minor groove platform with extra cWW
geometric
IL_5J7L_006
IL_90351.1
IL_8VS9_0071/16S/70:73,
1/16S/97:98		Minor groove platform
homologous
IL_5J7L_007
IL_15052.4
IL_8VS9_2351/16S/75:76,
1/16S/93:95		Single bulged G
homologous
IL_5J7L_395
IL_00225.13
IL_8VS9_0101/16S/128:131,
1/16S/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_8VS9_0111/16S/132:136,
1/16S/227:230		Minor groove platform related
homologous
IL_5J7L_010
IL_64231.5
IL_8VS9_0131/16S/144:146,
1/16S/176:178		Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.5
IL_8VS9_0141/16S/147:153,
1/16S/168:175		tWH-tWH-tHW-tHW
homologous
IL_6CZR_121
NA
IL_8VS9_0161/16S/203:206,
1/16S/213:214		Minor groove platform
geometric
IL_6CZR_155
NA
IL_8VS9_0171/16S/242:247,
1/16S/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_8VS9_0181/16S/249:252,
1/16S/274:275		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_8VS9_0191/16S/292:293,
1/16S/304:308		C-loop
homologous
IL_5J7L_016
IL_03109.3
IL_8VS9_0201/16S/320:322,
1/16S/332:333		Single stack bend
geometric
IL_4C7O_002
IL_90729.1
IL_8VS9_0211/16S/367:369,
1/16S/392:393		Single bulged U
homologous
IL_5J7L_017
IL_89505.4
IL_8VS9_0221/16S/371:375,
1/16S/389:390		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_8VS9_0231/16S/375:376,
1/16S/387:389		Single bulged G
geometric
IL_4LFB_016
IL_00225.13
IL_8VS9_2151/16S/409:416,
1/16S/427:433		No text annotation
homologous
IL_5J7L_020
IL_28026.3
IL_8VS9_0271/16S/440:442,
1/16S/492:497		No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_8VS9_0281/16S/446:450,
1/16S/483:488		tSH-tHW-tWW
geometric
IL_5J7L_022
IL_88269.4
IL_8VS9_0291/16S/450:455,
1/16S/477:483		No text annotation
homologous
IL_5J7L_023
IL_70801.1
IL_8VS9_0311/16S/504:511,
1/16S/540:541		SSU/LSU pseudoknot
homologous
IL_6CZR_132
NA
IL_8VS9_0321/16S/515:521,
1/16S/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_8VS9_0331/16S/569:575,
1/16S/880:881		No text annotation
homologous
IL_6CZR_134
NA
IL_8VS9_0341/16S/580:584,
1/16S/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_8VS9_0361/16S/594:596,
1/16S/644:645		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_8VS9_0371/16S/597:598,
1/16S/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.4
IL_8VS9_0381/16S/605:612,
1/16S/628:633		No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_8VS9_0401/16S/654:655,
1/16S/751:754		Major groove platform; stack outside cWW
homologous
IL_5J7L_031
IL_50694.7
IL_8VS9_0411/16S/659:660,
1/16S/745:747		Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_8VS9_0421/16S/662:666,
1/16S/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_8VS9_2181/16S/673:677,
1/16S/713:717		Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_49751.4
IL_8VS9_0441/16S/684:688,
1/16S/699:706		Kink-turn
homologous
IL_5J7L_035
IL_01488.3
IL_8VS9_0451/16S/774:778,
1/16S/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.2
IL_8VS9_0461/16S/779:783,
1/16S/799:803		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_8VS9_0471/16S/887:894,
1/16S/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_8VS9_0481/16S/922:923,
1/16S/1393:1395		Single bulged A
homologous
IL_5J7L_039
IL_31462.5
IL_8VS9_0491/16S/925:927,
1/16S/1390:1391		Single bulged G
homologous
IL_4LFB_036
IL_00225.13
IL_8VS9_0511/16S/933:935,
1/16S/1380:1384		Minor groove platform
geometric
IL_5J7L_041
IL_47078.3
IL_8VS9_0521/16S/953:954,
1/16S/1226:1228		No text annotation
homologous
IL_6CZR_150
NA
IL_8VS9_0531/16S/993:997,
1/16S/1044:1045		Minor groove platform
geometric
IL_5J7L_043
IL_47078.3
IL_8VS9_0541/16S/998:999,
1/16S/1041:1043		Single stack bend
homologous
IL_5J7L_044
IL_26793.1
IL_8VS9_0551/16S/1003:1006,
1/16S/1023:1037		No text annotation
IL_8VS9_0561/16S/1048:1050,
1/16S/1208:1209		Single bulged U
homologous
IL_5J7L_046
IL_89505.4
IL_8VS9_2201/16S/1052:1056,
1/16S/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_8VS9_0581/16S/1057:1058,
1/16S/1199:1203		Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_8VS9_0591/16S/1060:1061,
1/16S/1195:1197		Single bulged A
homologous
IL_5J7L_049
IL_31462.5
IL_8VS9_0601/16S/1061:1063,
1/16S/1193:1195		Isolated non-canonical cWW pair
geometric
IL_5VCI_001
IL_28037.2
IL_8VS9_0621/16S/1124:1128,
1/16S/1144:1149		No text annotation
homologous
IL_5J7L_051
IL_06691.1
IL_8VS9_0631/16S/1129:1132,
1/16S/1142:1143		Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_8VS9_0641/16S/1158:1161,
1/16S/1175:1181		No text annotation
geometric
IL_5J7L_053
IL_42032.1
IL_8VS9_0651/16S/1247:1253,
1/16S/1284:1290		No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_8VS9_0661/16S/1255:1258,
1/16S/1277:1282		180 degree turn
homologous
IL_5J7L_055
IL_11344.2
IL_8VS9_0671/16S/1259:1263,
1/16S/1272:1276		Triple sheared
homologous
IL_5J7L_056
IL_17948.2
IL_8VS9_2211/16S/1303:1308,
1/16S/1329:1334		No text annotation
homologous
IL_4LFB_055
IL_85536.2
IL_8VS9_0691/16S/1399:1401,
1/16S/1501:1504		No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_8VS9_0701/16S/1401:1404,
1/16S/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_8VS9_0711/16S/1405:1407,
1/16S/1494:1496		Isolated non-canonical cWW pair
geometric
IL_3GM7_004
IL_87907.2
IL_8VS9_0721/16S/1407:1409,
1/16S/1491:1494		Decoding loop related
geometric
IL_3C3Z_002
IL_31737.3
IL_8VS9_0731/16S/1412:1414,
1/16S/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_8VS9_0741/16S/1416:1419,
1/16S/1481:1484		Double sheared
homologous
IL_6CZR_169
NA
IL_8VS9_0751/16S/1430:1435,
1/16S/1466:1470		Triple sheared related
homologous
IL_5J7L_063
IL_80231.1
IL_8VS9_0761/16S/1440:1442,
1/16S/1460:1461		Single bulged A
homologous
IL_5J7L_064
IL_31462.5
IL_8VS9_0771/16S/1445:1448,
1/16S/1455:1457		No text annotation
homologous
IL_5J7L_065
IL_31531.3
IL_8VS9_0781/23S/24:30,
1/23S/510:516		Triple sheared with non-canonical cWW
homologous
IL_7A0S_001
IL_04021.2
IL_8VS9_0791/23S/36:37,
1/23S/442:444		Single bulged A
homologous
IL_7A0S_002
IL_31462.5
IL_8VS9_0801/23S/43:44,
1/23S/434:436		Minor groove platform
homologous
IL_5J7L_247
IL_51454.2
IL_8VS9_0811/23S/81:85,
1/23S/97:105		No text annotation
homologous
IL_5J7L_248
IL_37015.1
IL_8VS9_0821/23S/183:184,
1/23S/212:214		Single stack bend
homologous
IL_5J7L_249
IL_90729.1
IL_8VS9_0831/23S/188:194,
1/23S/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7RQB_006
NA
IL_8VS9_0841/23S/239:245,
1/23S/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
IL_26307.2
IL_8VS9_0851/23S/269:271,
1/23S/366:370		No text annotation
homologous
IL_5J7L_252
IL_47972.1
IL_8VS9_0861/23S/274:281,
1/23S/359:363		No text annotation
homologous
IL_5J7L_253
IL_77870.1
IL_8VS9_0871/23S/293:295,
1/23S/343:347		No text annotation
homologous
IL_5J7L_254
IL_69440.3
IL_8VS9_0891/23S/481:484,
1/23S/496:509		No text annotation
homologous
IL_5J7L_255
IL_81516.2
IL_8VS9_0901/23S/536:539,
1/23S/554:557		Double sheared
homologous
IL_5J7L_256
IL_09705.15
IL_8VS9_0911/23S/564:566,
1/23S/575:577		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
IL_07785.1
IL_8VS9_2231/23S/606:610,
1/23S/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
IL_66798.2
IL_8VS9_0931/23S/672:674,
1/23S/806:808		No text annotation
homologous
IL_7RQB_017
NA
IL_8VS9_0941/23S/674:678,
1/23S/799:806		tHW-tHW cross-strand stack
geometric
IL_5J7L_260
IL_54041.2
IL_8VS9_0951/23S/697:698,
1/23S/763:765		Single bulged A
homologous
IL_5J7L_261
IL_31462.5
IL_8VS9_0961/23S/702:703,
1/23S/728:730		Single bulged G
homologous
IL_5J7L_262
IL_00225.13
IL_8VS9_0971/23S/703:707,
1/23S/724:728		Triple sheared
geometric
IL_7RQB_021
NA
IL_8VS9_0981/23S/738:740,
1/23S/757:758		Major groove platform
homologous
IL_5J7L_264
IL_48076.6
IL_8VS9_0991/23S/775:777,
1/23S/787:791		Multiple bulged bases
homologous
IL_5J7L_265
IL_06549.2
IL_8VS9_1001/23S/837:838,
1/23S/940:942		Single stack bend
homologous
IL_4WF9_028
IL_90729.1
IL_8VS9_1011/23S/844:847,
1/23S/933:934		Other IL
homologous
IL_5J7L_267
IL_90729.1
IL_8VS9_2241/23S/844:848,
1/23S/930:934		No text annotation
geometric
IL_5J7L_399
IL_96236.1
IL_8VS9_1021/23S/847:848,
1/23S/930:933		Stack outside cWW
geometric
IL_5J7L_268
IL_56987.1
IL_8VS9_1031/23S/850:851,
1/23S/926:928		Single stack bend
homologous
IL_5J7L_269
IL_26793.1
IL_8VS9_1041/23S/856:862,
1/23S/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_5J7L_270
IL_29198.2
IL_8VS9_1051/23S/862:863,
1/23S/913:915		Multiple bulged bases
geometric
IL_5XWP_001
IL_82107.4
IL_8VS9_1061/23S/864:868,
1/23S/909:912		C-loop
homologous
IL_7RQB_029
NA
IL_8VS9_1071/23S/870:872,
1/23S/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
IL_28037.2
IL_8VS9_1081/23S/875:879,
1/23S/898:902		Triple sheared
homologous
IL_5J7L_274
IL_17948.2
IL_8VS9_2361/23S/880:881,
1/23S/895:897		Minor groove platform
geometric
IL_4V9F_075
IL_51454.2
IL_8VS9_1101/23S/994:996,
1/23S/1159:1160		Single bulged C
homologous
IL_5J7L_276
IL_61258.15
IL_8VS9_1111/23S/998:1002,
1/23S/1153:1157		UAA/GAN
homologous
IL_7A0S_033
IL_38507.2
IL_8VS9_1121/23S/1004:1011,
1/23S/1150:1151		SSU/LSU pseudoknot
geometric
IL_4WF9_037
IL_41203.4
IL_8VS9_1131/23S/1011:1013,
1/23S/1149:1150		Single bulged U
homologous
IL_5J7L_279
IL_89505.4
IL_8VS9_1141/23S/1018:1024,
1/23S/1140:1144		Kink-turn related
geometric
IL_5J7L_280
IL_57188.5
IL_8VS9_1151/23S/1024:1030,
1/23S/1124:1140		No text annotation
geometric
IL_5J7L_281
IL_50715.3
IL_8VS9_1161/23S/1031:1034,
1/23S/1121:1123		Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_8VS9_1171/23S/1038:1041,
1/23S/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
IL_85033.2
IL_8VS9_1181/23S/1043:1051,
1/23S/1108:1112		Kink-turn
homologous
IL_5J7L_284
IL_99692.2
IL_8VS9_1191/23S/1059:1063,
1/23S/1075:1079		No text annotation
IL_8VS9_1201/23S/1087:1090,
1/23S/1101:1102		Major groove platform
geometric
IL_3NKB_002
IL_48076.6
IL_8VS9_1211/23S/1196:1198,
1/23S/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
IL_42997.3
IL_8VS9_1221/23S/1202:1206,
1/23S/1240:1243		No text annotation
homologous
IL_5J7L_287
IL_91920.1
IL_8VS9_1231/23S/1208:1215,
1/23S/1234:1238		Kink-turn
homologous
IL_5J7L_288
IL_70923.9
IL_8VS9_1241/23S/1262:1269,
1/23S/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
IL_04346.10
IL_8VS9_1251/23S/1310:1313,
1/23S/1603:1604		Major groove platform; stack outside cWW
homologous
IL_7RQB_050
NA
IL_8VS9_1261/23S/1319:1323,
1/23S/1331:1333		C-loop
homologous
IL_5J7L_291
IL_63596.11
IL_8VS9_1271/23S/1351:1355,
1/23S/1376:1380		UAA/GAN
homologous
IL_5J7L_292
IL_89021.2
IL_8VS9_1281/23S/1357:1361,
1/23S/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
IL_17136.7
IL_8VS9_1291/23S/1415:1416,
1/23S/1582:1587		No text annotation
homologous
IL_5J7L_294
IL_87211.1
IL_8VS9_1301/23S/1417:1421,
1/23S/1577:1581		UAA/GAN
homologous
IL_5J7L_295
IL_38507.2
IL_8VS9_1311/23S/1432:1435,
1/23S/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
IL_58112.2
IL_8VS9_1321/23S/1437:1440,
1/23S/1551:1555		tSH-tHW
homologous
IL_5J7L_297
IL_99646.2
IL_8VS9_1331/23S/1450:1451,
1/23S/1459:1461		Single bulged U
geometric
IL_5J7L_298
IL_89505.4
IL_8VS9_2371/23S/1468:1471,
1/23S/1520:1524		No text annotation
homologous
IL_5J7L_299
IL_68574.4
IL_8VS9_1351/23S/1474:1478,
1/23S/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
IL_38862.4
IL_8VS9_1361/23S/1481:1482,
1/23S/1507:1510		180 degree turn
homologous
IL_5J7L_301
IL_00881.1
IL_8VS9_1371/23S/1489:1491,
1/23S/1499:1500		Single bulged A
homologous
IL_5J7L_302
IL_31462.5
IL_8VS9_1381/23S/1526:1529,
1/23S/1542:1546		UAA/GAN variation
geometric
IL_5J7L_303
IL_23774.1
IL_8VS9_1401/23S/1651:1656,
1/23S/2004:2006		No text annotation
homologous
IL_5J7L_304
IL_12566.4
IL_8VS9_1411/23S/1663:1665,
1/23S/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
IL_67095.2
IL_8VS9_1421/23S/1666:1669,
1/23S/1993:1994		Major groove platform; stack outside cWW
homologous
IL_4WF9_064
IL_50694.7
IL_8VS9_2261/23S/1666:1674,
1/23S/1990:1994		No text annotation
homologous
IL_4WF9_117
IL_22854.4
IL_8VS9_1431/23S/1669:1674,
1/23S/1990:1993		Intercalated tWH
geometric
IL_4WF9_065
IL_76758.2
IL_8VS9_1441/23S/1686:1691,
1/23S/1696:1702		tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
IL_47346.2
IL_8VS9_1451/23S/1712:1718,
1/23S/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
IL_88269.4
IL_8VS9_1461/23S/1720:1724,
1/23S/1736:1740		Triple sheared
homologous
IL_5J7L_310
IL_50730.2
IL_8VS9_1481/23S/1770:1771,
1/23S/1980:1982		Single bulged A
homologous
IL_7A0S_064
IL_31462.5
IL_8VS9_1491/23S/1798:1804,
1/23S/1813:1821		Kink-turn related
homologous
IL_5J7L_313
IL_17069.5
IL_8VS9_1501/23S/1837:1840,
1/23S/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
IL_95583.2
IL_8VS9_1511/23S/1841:1842,
1/23S/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
IL_82107.4
IL_8VS9_1521/23S/1846:1849,
1/23S/1893:1894		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
IL_68140.4
IL_8VS9_2281/23S/1851:1860,
1/23S/1882:1891		No text annotation
homologous
IL_5J7L_387
IL_61249.1
IL_8VS9_1531/23S/1864:1867,
1/23S/1874:1878		UAA/GAN variation
homologous
IL_5J7L_317
IL_77691.5
IL_8VS9_1551/23S/1933:1934,
1/23S/1964:1967		Bulged stacked bases
geometric
IL_7RQB_076
NA
IL_8VS9_1561/23S/1934:1945,
1/23S/1961:1964		No text annotation
homologous
IL_7A0S_072
IL_04332.3
IL_8VS9_1571/23S/2050:2052,
1/23S/2617:2618		Major groove platform
homologous
IL_5J7L_320
IL_48076.6
IL_8VS9_1581/23S/2054:2056,
1/23S/2612:2615		No text annotation
homologous
IL_4WF9_079
IL_83389.2
IL_8VS9_1591/23S/2067:2069,
1/23S/2442:2443		Single bulged U
homologous
IL_7RQB_080
NA
IL_8VS9_1601/23S/2070:2071,
1/23S/2438:2441		Minor groove platform
homologous
IL_7RQB_081
NA
IL_8VS9_1621/23S/2081:2083,
1/23S/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
IL_85599.2
IL_8VS9_1631/23S/2085:2087,
1/23S/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
IL_28037.2
IL_8VS9_1651/23S/2103:2105,
1/23S/2184:2186		Isolated non-canonical cWW pair
geometric
IL_3BNR_012
IL_28037.2
IL_8VS9_1661/23S/2107:2110,
1/23S/2179:2182		Tandem non-canonical cWW pairs
geometric
IL_3TZR_003
IL_77658.1
IL_8VS9_1671/23S/2110:2121,
1/23S/2177:2179		No text annotation
IL_8VS9_1691/23S/2124:2127,
1/23S/2161:2174		No text annotation
IL_8VS9_1701/23S/2128:2137,
1/23S/2154:2160		No text annotation
IL_8VS9_1721/23S/2202:2204,
1/23S/2220:2221		Single bulged U
homologous
IL_5J7L_331
IL_89505.4
IL_8VS9_1741/23S/2350:2353,
1/23S/2364:2367		Double sheared
homologous
IL_5J7L_333
IL_09705.15
IL_8VS9_1751/23S/2401:2403,
1/23S/2414:2415		No text annotation
IL_8VS9_1761/23S/2453:2454,
1/23S/2498:2500		Single stack bend
geometric
IL_4WF9_089
IL_26793.1
IL_8VS9_1771/23S/2454:2455,
1/23S/2496:2498		Major groove platform
homologous
IL_7RQB_092
NA
IL_8VS9_1781/23S/2457:2459,
1/23S/2493:2494		Major groove platform
homologous
IL_4WF9_091
IL_48076.6
IL_8VS9_2291/23S/2457:2461,
1/23S/2489:2494		No text annotation
IL_8VS9_1791/23S/2459:2461,
1/23S/2489:2493		Major groove minor groove platform with extra cWW
geometric
IL_7RQB_094
NA
IL_8VS9_2301/23S/2465:2467,
1/23S/2484:2485		Single stack bend
geometric
IL_5J7L_391
IL_26793.1
IL_8VS9_2311/23S/2467:2470,
1/23S/2480:2484		UAA/GAN variation
geometric
IL_3FTM_002
IL_77691.5
IL_8VS9_1811/23S/2507:2508,
1/23S/2580:2582		Major groove platform
homologous
IL_7RQB_096
NA
IL_8VS9_1821/23S/2510:2512,
1/23S/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_4WF9_095
IL_07785.1
IL_8VS9_1831/23S/2512:2513,
1/23S/2571:2574		No text annotation
geometric
IL_5J7L_341
IL_42626.2
IL_8VS9_1841/23S/2522:2523,
1/23S/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
IL_02555.1
IL_8VS9_1851/23S/2591:2592,
1/23S/2601:2603		Single bulged A
homologous
IL_7RQB_101
NA
IL_8VS9_1861/23S/2636:2640,
1/23S/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
IL_04638.3
IL_8VS9_1871/23S/2652:2658,
1/23S/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_5J7L_346
IL_16458.4
IL_8VS9_1881/23S/2680:2684,
1/23S/2725:2727		C-loop
homologous
IL_5J7L_347
IL_63596.11
IL_8VS9_1891/23S/2687:2691,
1/23S/2718:2722		No text annotation
homologous
IL_5J7L_348
IL_23774.1
IL_8VS9_1901/23S/2695:2696,
1/23S/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
IL_42626.2
IL_8VS9_1911/23S/2737:2742,
1/23S/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
IL_49767.8
IL_8VS9_1921/23S/2806:2811,
1/23S/2889:2892		No text annotation
homologous
IL_5J7L_351
IL_29471.1
IL_8VS9_1931/23S/2838:2839,
1/23S/2878:2880		Major groove intercalation
homologous
IL_4WF9_106
IL_66635.5
IL_8VS9_1941/23S/2843:2846,
1/23S/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
IL_64231.5
IL_8VS9_1951/23S/2847:2852,
1/23S/2865:2869		tHS double platform
homologous
IL_7RQB_110
NA
IL_8VS9_1961/5S/17:18,
1/5S/65:67		Major groove intercalation
homologous
IL_5J7L_355
IL_31462.5
IL_8VS9_1971/5S/23:28,
1/5S/56:60		No text annotation
homologous
IL_7RQB_112
NA
IL_8VS9_1981/5S/30:31,
1/5S/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_8VS9_1991/5S/34:38,
1/5S/44:48		Symmetric double minor groove platform
geometric
IL_5J7L_358
IL_58103.11
IL_8VS9_2001/5S/71:79,
1/5S/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
IL_56455.6
IL_8VS9_2381/TMRN/28:36,
1/TMRN/318:325		No text annotation
IL_8VS9_2041/TMRN/36:40,
1/TMRN/314:318		No text annotation
IL_8VS9_2051/TMRN/41:45,
1/TMRN/306:313		No text annotation
IL_8VS9_2061/TMRN/50:52,
1/TMRN/63:66		Isolated non-canonical cWW pair
geometric
IL_1MZP_001
IL_28037.2
IL_8VS9_2081/TMRN/113:115,
1/TMRN/129:132		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_85599.2
IL_8VS9_2101/TMRN/143:145,
1/TMRN/170:176		No text annotation
IL_8VS9_2111/TMRN/147:152,
1/TMRN/163:168		No text annotation
IL_8VS9_2321/TMRN/202:208,
1/TMRN/221:227		No text annotation
IL_8VS9_2131/TMRN/253:259,
1/TMRN/272:278		No text annotation

Problematic loops

#loop idProblemSequence
IL_8VS9_005Isolated non-canonical cWW pair
IL_8VS9_214No text annotation
IL_8VS9_008Tandem non-canonical cWW pairs
IL_8VS9_009No text annotation
IL_8VS9_012Isolated cWH basepair
IL_8VS9_015Isolated cWS basepair
IL_8VS9_024Isolated non-canonical cWW pair
IL_8VS9_025No text annotation
IL_8VS9_026Isolated non-canonical cWW pair
IL_8VS9_030Tandem non-canonical cWW pairs
IL_8VS9_035Isolated non-canonical cWW pair
IL_8VS9_216No text annotation
IL_8VS9_039Isolated non-canonical cWW pair
IL_8VS9_217No text annotation
IL_8VS9_043No text annotation
IL_8VS9_2199x7 Sarcin-Ricin with inserted C; G-bulge
IL_8VS9_050No text annotation
IL_8VS9_057Tandem non-canonical cWW pairs
IL_8VS9_061No text annotation
IL_8VS9_068No text annotation
IL_8VS9_222No text annotation
IL_8VS9_088Isolated non-canonical cWW pair
IL_8VS9_092No text annotation
IL_8VS9_225No text annotation
IL_8VS9_109No text annotation
IL_8VS9_134No text annotation
IL_8VS9_139No text annotation
IL_8VS9_147Isolated non-canonical cWW pair
IL_8VS9_227Isolated non-canonical cWW pair
IL_8VS9_154Isolated non-canonical cWW pair
IL_8VS9_161No text annotation
IL_8VS9_164Isolated non-canonical cWW pair
IL_8VS9_168No text annotation
IL_8VS9_171Double sheared
IL_8VS9_173Isolated non-canonical cWW pair
IL_8VS9_180Triple sheared
IL_8VS9_201Isolated non-canonical cWW pair
IL_8VS9_202No text annotation
IL_8VS9_203No text annotation
IL_8VS9_207Isolated non-canonical cWW pair
IL_8VS9_209No text annotation
IL_8VS9_212No text annotation
IL_8VS9_233No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8VS9_0191/16S/46:47,
1/16S/361:367,
1/16S/393:395		No text annotation
geometric
J3_8C3A_082
NA
J3_8VS9_0201/16S/46:52,
1/16S/359:367,
1/16S/393:395		No text annotation
homologous
J3_5J7L_050
J3_46317.4
J3_8VS9_0211/16S/586:588,
1/16S/651:654,
1/16S/754:755		No text annotation
homologous
J3_5J7L_002
J3_56052.5
J3_8VS9_0221/16S/586:588,
1/16S/651:655,
1/16S/751:755		No text annotation
homologous
J3_5J7L_051
J3_17385.4
J3_8VS9_0231/16S/672:673,
1/16S/717:725,
1/16S/732:734		No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_8VS9_0011/16S/826:829,
1/16S/857:861,
1/16S/868:874		No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_8VS9_0021/16S/936:939,
1/16S/1344:1350,
1/16S/1372:1379		No text annotation
homologous
J3_5J7L_052
J3_25303.4
J3_8VS9_0031/16S/943:946,
1/16S/1235:1237,
1/16S/1337:1340		No text annotation
homologous
J3_5J7L_005
J3_52655.4
J3_8VS9_0041/16S/955:962,
1/16S/973:984,
1/16S/1221:1225		No text annotation
homologous
J3_5J7L_006
J3_83516.4
J3_8VS9_0051/16S/990:993,
1/16S/1045:1047,
1/16S/1210:1215		No text annotation
homologous
J3_5J7L_007
J3_82572.1
J3_8VS9_0241/16S/990:997,
1/16S/1044:1047,
1/16S/1210:1215		No text annotation
homologous
J3_5J7L_053
J3_76475.2
J3_8VS9_0061/16S/1063:1068,
1/16S/1107:1113,
1/16S/1187:1193		No text annotation
homologous
J3_4LFB_007
J3_08394.3
J3_8VS9_0251/16S/1073:1074,
1/16S/1083:1086,
1/16S/1099:1102		No text annotation
homologous
J3_4LFB_017
J3_79369.1
J3_8VS9_0071/16S/1116:1118,
1/16S/1155:1158,
1/16S/1181:1184		No text annotation
homologous
J3_5J7L_010
J3_82365.4
J3_8VS9_0391/16S/1116:1118,
1/16S/1155:1161,
1/16S/1175:1184		No text annotation
homologous
J3_5J7L_054
J3_17791.2
J3_8VS9_0081/16S/1237:1241,
1/16S/1296:1303,
1/16S/1334:1337		No text annotation
homologous
J3_5J7L_011
J3_37047.6
J3_8VS9_0281/23S/30:31,
1/23S/474:481,
1/23S/509:510		No text annotation
geometric
J3_5J7L_036
J3_60031.2
J3_8VS9_0291/23S/30:31,
1/23S/474:484,
1/23S/496:510		No text annotation
homologous
J3_9DFE_002
J3_92134.2
J3_8VS9_0301/23S/32:35,
1/23S/445:461,
1/23S/468:473		No text annotation
homologous
J3_5J7L_067
J3_30040.2
J3_8VS9_0311/23S/56:57,
1/23S/70:76,
1/23S/110:114		No text annotation
homologous
J3_5J7L_037
J3_35667.2
J3_8VS9_0321/23S/297:301,
1/23S/316:325,
1/23S/337:341		No text annotation
homologous
J3_5J7L_068
J3_46299.2
J3_8VS9_0091/23S/683:689,
1/23S/773:775,
1/23S/791:794		No text annotation
homologous
J3_5J7L_038
J3_64189.2
J3_8VS9_0101/23S/698:700,
1/23S/732:736,
1/23S/760:763		No text annotation
homologous
J3_4WF9_003
J3_44724.7
J3_8VS9_0111/23S/1055:1058,
1/23S/1080:1087,
1/23S/1102:1104		No text annotation
J3_8VS9_0401/23S/1055:1057,
1/23S/1081:1090,
1/23S/1101:1104		No text annotation
J3_8VS9_0121/23S/1298:1303,
1/23S/1625:1627,
1/23S/1639:1642		No text annotation
homologous
J3_5J7L_041
J3_32852.6
J3_8VS9_0131/23S/1306:1309,
1/23S/1605:1611,
1/23S/1620:1622		No text annotation
homologous
J3_5J7L_042
J3_19545.2
J3_8VS9_0341/23S/1344:1349,
1/23S/1382:1385,
1/23S/1402:1403		No text annotation
homologous
J3_5J7L_043
J3_92705.1
J3_8VS9_0351/23S/1424:1429,
1/23S/1564:1565,
1/23S/1568:1574		No text annotation
homologous
J3_9DFE_013
J3_34864.2
J3_8VS9_0141/23S/2091:2093,
1/23S/2196:2200,
1/23S/2223:2228		Kink-turn in J3
homologous
J3_5J7L_044
J3_89368.5
J3_8VS9_0361/23S/2282:2284,
1/23S/2384:2395,
1/23S/2421:2427		No text annotation
homologous
J3_5J7L_070
J3_20992.1
J3_8VS9_0151/23S/2295:2299,
1/23S/2317:2323,
1/23S/2332:2337		No text annotation
homologous
J3_5J7L_071
J3_44961.1
J3_8VS9_0161/23S/2517:2520,
1/23S/2545:2547,
1/23S/2561:2567		No text annotation
homologous
J3_5J7L_046
J3_32601.5
J3_8VS9_0371/23S/2789:2791,
1/23S/2805:2806,
1/23S/2892:2894		No text annotation
homologous
J3_5J7L_047
J3_30104.1
J3_8VS9_0171/23S/2812:2815,
1/23S/2831:2836,
1/23S/2882:2888		No text annotation
homologous
J3_5J7L_048
J3_64069.1
J3_8VS9_0181/5S/10:16,
1/5S/68:70,
1/5S/106:110		No text annotation
homologous
J3_5J7L_049
J3_89095.1
J3_8VS9_0411/TMRN/7:21,
1/TMRN/332:338,
1/TMRN/350:353		No text annotation
J4_8VS9_0011/16S/115:122,
1/16S/239:240,
1/16S/286:289,
1/16S/311:312		No text annotation
homologous
J4_5J7L_001
J4_35578.3
J4_8VS9_0021/16S/142:144,
1/16S/178:184,
1/16S/193:198,
1/16S/219:221		No text annotation
homologous
J4_5J7L_002
J4_01665.1
J4_8VS9_0031/16S/575:577,
1/16S/764:769,
1/16S/810:821,
1/16S/879:880		No text annotation
homologous
J4_5J7L_003
J4_61885.6
J4_8VS9_0041/23S/268:269,
1/23S/370:375,
1/23S/399:406,
1/23S/421:424		No text annotation
homologous
J4_5J7L_018
J4_45801.6
J4_8VS9_0051/23S/601:604,
1/23S/624:628,
1/23S/635:638,
1/23S/650:656		No text annotation
homologous
J4_5J7L_020
J4_60168.1
J4_8VS9_0061/23S/1270:1276,
1/23S/1294:1295,
1/23S/1645:1648,
1/23S/2009:2010		No text annotation
homologous
J4_5J7L_021
J4_64571.5
J4_8VS9_0071/23S/1310:1314,
1/23S/1338:1343,
1/23S/1404:1405,
1/23S/1597:1604		No text annotation
homologous
J4_5J7L_022
J4_69051.6
J4_8VS9_0081/23S/1313:1314,
1/23S/1338:1343,
1/23S/1404:1405,
1/23S/1597:1603		No text annotation
homologous
J4_5J7L_023
J4_10313.5
J4_8VS9_0091/23S/1444:1445,
1/23S/1466:1467,
1/23S/1525:1526,
1/23S/1546:1547		No text annotation
homologous
J4_5J7L_024
J4_24280.2
J4_8VS9_0101/23S/1772:1776,
1/23S/1788:1792,
1/23S/1827:1830,
1/23S/1975:1979		No text annotation
homologous
J4_5J7L_025
J4_61477.5
J4_8VS9_0111/23S/1833:1835,
1/23S/1905:1906,
1/23S/1924:1933,
1/23S/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_93343.1
J4_8VS9_0121/23S/2285:2289,
1/23S/2343:2347,
1/23S/2370:2372,
1/23S/2381:2383		No text annotation
homologous
J4_5J7L_027
J4_04930.6
J4_8VS9_0131/23S/2643:2646,
1/23S/2674:2676,
1/23S/2731:2735,
1/23S/2769:2771		No text annotation
homologous
J4_5J7L_028
J4_77044.4
J4_8VS9_0141/ATRN/7:10,
1/ATRN/25:27,
1/ATRN/43:49,
1/ATRN/65:66		No text annotation
homologous
J4_7YSE_001
J4_70449.27
J4_8VS9_0161/ETRN/7:10,
1/ETRN/25:27,
1/ETRN/43:49,
1/ETRN/65:66		No text annotation
homologous
J4_9DFC_015
J4_70449.27
J5_8VS9_0011/16S/36:39,
1/16S/403:406,
1/16S/436:440,
1/16S/497:500,
1/16S/545:548		No text annotation
homologous
J5_5J7L_001
J5_92941.1
J5_8VS9_0021/16S/36:39,
1/16S/403:406,
1/16S/436:442,
1/16S/492:500,
1/16S/545:548		No text annotation
homologous
J5_5J7L_002
J5_67416.1
J5_8VS9_0111/16S/58:61,
1/16S/106:113,
1/16S/314:316,
1/16S/337:339,
1/16S/350:354		No text annotation
homologous
J5_4LFB_002
J5_59910.6
J5_8VS9_0041/23S/47:54,
1/23S/116:121,
1/23S/130:131,
1/23S/148:150,
1/23S/176:178		No text annotation
homologous
J5_5J7L_013
J5_01737.2
J5_8VS9_0051/23S/531:533,
1/23S/560:564,
1/23S/577:579,
1/23S/1261:1262,
1/23S/2017:2018		No text annotation
homologous
J5_5J7L_014
J5_43153.5
J5_8VS9_0061/23S/584:589,
1/23S/668:671,
1/23S/809:812,
1/23S/1195:1196,
1/23S/1250:1256		No text annotation
homologous
J5_5J7L_015
J5_74302.5
J5_8VS9_0071/23S/1674:1682,
1/23S/1706:1707,
1/23S/1751:1752,
1/23S/1756:1764,
1/23S/1988:1990		No text annotation
homologous
J5_5J7L_016
J5_62523.6
J5_8VS9_0081/23S/2057:2064,
1/23S/2446:2453,
1/23S/2500:2507,
1/23S/2582:2588,
1/23S/2606:2611		No text annotation
J5_8VS9_0091/23S/2074:2077,
1/23S/2243:2246,
1/23S/2258:2259,
1/23S/2281:2282,
1/23S/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.1
J5_8VS9_0101/TMRN/48:108,
1/TMRN/137:139,
1/TMRN/180:200,
1/TMRN/229:252,
1/TMRN/279:303		No text annotation
J5_8VS9_0121/TMRN/48:108,
1/TMRN/137:138,
1/TMRN/181:200,
1/TMRN/229:252,
1/TMRN/279:303		No text annotation
J6_8VS9_0011/23S/45:46,
1/23S/179:183,
1/23S/214:224,
1/23S/231:235,
1/23S/262:266,
1/23S/426:433		No text annotation
J6_8VS9_0021/23S/2074:2077,
1/23S/2243:2246,
1/23S/2258:2259,
1/23S/2281:2284,
1/23S/2384:2395,
1/23S/2421:2435		No text annotation
J6_8VS9_0041/TMRN/48:52,
1/TMRN/63:108,
1/TMRN/137:138,
1/TMRN/181:200,
1/TMRN/229:252,
1/TMRN/279:303		No text annotation
J7_8VS9_0011/23S/8:15,
1/23S/525:531,
1/23S/2018:2023,
1/23S/2040:2043,
1/23S/2625:2630,
1/23S/2788:2789,
1/23S/2894:2895		No text annotation
J7_8VS9_0021/23S/817:822,
1/23S/835:837,
1/23S/942:946,
1/23S/971:976,
1/23S/987:991,
1/23S/1163:1164,
1/23S/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_8VS9_026No text annotation
J3_8VS9_027No text annotation
J3_8VS9_033No text annotation
J3_8VS9_038No text annotation
J4_8VS9_015tRNA junction
J5_8VS9_003No text annotation
J6_8VS9_003No text annotation

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