3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GCUUGC
Length
6 nucleotides
Bulged bases
8VS9|1|16S|U|85, 8VS9|1|16S|G|86
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VS9_002 not in the Motif Atlas
Geometric match to HL_2ZNI_001
Geometric discrepancy: 0.3239
The information below is about HL_2ZNI_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

8VS9|1|16S|G|82
8VS9|1|16S|C|83
8VS9|1|16S|U|84
8VS9|1|16S|U|85
8VS9|1|16S|G|86
8VS9|1|16S|C|87

Current chains

Chain 16S
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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