HL_8VS9_011

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8VS9|1|16S|U|421, 8VS9|1|16S|C|422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_011 not in the Motif Atlas

Homologous match to HL_5J7L_011

Geometric discrepancy: 0.4454

The information below is about HL_5J7L_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8VS9|1|16S|C|419
8VS9|1|16S|U|420
8VS9|1|16S|U|421
8VS9|1|16S|C|422
8VS9|1|16S|G|423
8VS9|1|16S|G|424

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S03

30S ribosomal protein S3

Chain S04

30S ribosomal protein S4