HL_8VS9_012

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8VS9|1|16S|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_012 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.2377

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8VS9|1|16S|G|462
8VS9|1|16S|U|463
8VS9|1|16S|U|464
8VS9|1|16S|A|465
8VS9|1|16S|A|466
8VS9|1|16S|U|467
8VS9|1|16S|A|468
8VS9|1|16S|C|469
8VS9|1|16S|C|470

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains