HL_8VS9_025

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_025 not in the Motif Atlas

Homologous match to HL_6CZR_097

Geometric discrepancy: 0.2104

The information below is about HL_6CZR_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|16S|G|1134
8VS9|1|16S|U|1135
8VS9|1|16S|C|1136
8VS9|1|16S|C|1137
8VS9|1|16S|G|1138
8VS9|1|16S|G|1139
8VS9|1|16S|C|1140

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S09

Small ribosomal subunit protein uS9