HL_8VS9_026

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

8VS9|1|16S|A|1167, 8VS9|1|16S|U|1168

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_026 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.3891

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8VS9|1|16S|U|1165
8VS9|1|16S|G|1166
8VS9|1|16S|A|1167
8VS9|1|16S|U|1168
8VS9|1|16S|A|1169
8VS9|1|16S|A|1170
8VS9|1|16S|A|1171

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S02

30S ribosomal protein S2

Chain S21

30S ribosomal protein S21