HL_8VS9_029
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAUCAGAAUGC
- Length
- 11 nucleotides
- Bulged bases
- 8VS9|1|16S|U|1364
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VS9_029 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1711
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VS9|1|16S|G|1356
8VS9|1|16S|A|1357
8VS9|1|16S|U|1358
8VS9|1|16S|C|1359
8VS9|1|16S|A|1360
8VS9|1|16S|G|1361
8VS9|1|16S|A|1362
8VS9|1|16S|A|1363
8VS9|1|16S|U|1364
8VS9|1|16S|G|1365
8VS9|1|16S|C|1366
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S09
- Small ribosomal subunit protein uS9
- Chain S10
- 30S ribosomal protein S10
- Chain S13
- 30S ribosomal protein S13
- Chain S14
- Small ribosomal subunit protein uS14
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