HL_8VS9_037

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8VS9|1|23S|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_037 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.1208

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8VS9|1|23S|G|194
8VS9|1|23S|A|195
8VS9|1|23S|A|196
8VS9|1|23S|A|197
8VS9|1|23S|C|198
8VS9|1|23S|A|199
8VS9|1|23S|U|200
8VS9|1|23S|C|201

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain ETRN

Transfer RNA; tRNA

Chain L15

50S ribosomal protein L15

Chain L28

50S ribosomal protein L28