HL_8VS9_043

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8VS9|1|23S|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_043 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1092

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8VS9|1|23S|G|410
8VS9|1|23S|G|411
8VS9|1|23S|A|412
8VS9|1|23S|C|413
8VS9|1|23S|C|414
8VS9|1|23S|A|415
8VS9|1|23S|U|416
8VS9|1|23S|C|417

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L15

50S ribosomal protein L15