HL_8VS9_047

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

8VS9|1|23S|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_047 not in the Motif Atlas

Geometric match to HL_5J7L_150

Geometric discrepancy: 0.1561

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8VS9|1|23S|U|566
8VS9|1|23S|U|567
8VS9|1|23S|U|568
8VS9|1|23S|U|569
8VS9|1|23S|G|570
8VS9|1|23S|U|571
8VS9|1|23S|A|572
8VS9|1|23S|U|573
8VS9|1|23S|A|574
8VS9|1|23S|A|575

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L03

50S ribosomal protein L3

Chain L15

50S ribosomal protein L15

Chain L20

50S ribosomal protein L20

Chain L21

Ribosomal protein L21

Chain L32

50S ribosomal protein L32