3D structure

PDB id
8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GGUAACAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VS9_051 not in the Motif Atlas
Homologous match to HL_5J7L_154
Geometric discrepancy: 0.125
The information below is about HL_5J7L_154
Detailed Annotation
GNRA wlth tandem sheared
Broad Annotation
No text annotation
Motif group
HL_81538.2
Basepair signature
cWW-tSH-F-F-F-F
Number of instances in this motif group
16

Unit IDs

8VS9|1|23S|G|712
8VS9|1|23S|G|713
8VS9|1|23S|U|714
8VS9|1|23S|A|715
8VS9|1|23S|A|716
8VS9|1|23S|C|717
8VS9|1|23S|A|718
8VS9|1|23S|C|719

Current chains

Chain 23S
23S ribosomal RNA

Nearby chains

Chain 16S
Small subunit ribosomal RNA; SSU rRNA
Chain S15
Small ribosomal subunit protein uS15

Coloring options:


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