HL_8VS9_053

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

8VS9|1|23S|A|781, 8VS9|1|23S|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_053 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1079

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8VS9|1|23S|U|779
8VS9|1|23S|G|780
8VS9|1|23S|A|781
8VS9|1|23S|A|782
8VS9|1|23S|A|783
8VS9|1|23S|G|784
8VS9|1|23S|G|785

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2