HL_8VS9_055

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCAUCCCGAC

Length

11 nucleotides

Bulged bases

8VS9|1|23S|U|887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|23S|G|883
8VS9|1|23S|U|884
8VS9|1|23S|C|885
8VS9|1|23S|A|886
8VS9|1|23S|U|887
8VS9|1|23S|C|888
8VS9|1|23S|C|889
8VS9|1|23S|C|890
8VS9|1|23S|G|891
8VS9|1|23S|A|892
8VS9|1|23S|C|893

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain ATRN

Transfer RNA; tRNA

Chain TMRN

Transfer-messenger RNA; tmRNA; 10Sa RNA; SsrA