HL_8VS9_057

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_057 not in the Motif Atlas

Homologous match to HL_4WF9_028

Geometric discrepancy: 0.1804

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VS9|1|23S|G|978
8VS9|1|23S|A|979
8VS9|1|23S|A|980
8VS9|1|23S|A|981
8VS9|1|23S|C|982
8VS9|1|23S|A|983
8VS9|1|23S|A|984
8VS9|1|23S|C|985

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L20

50S ribosomal protein L20

Chain L21

Ribosomal protein L21