HL_8VS9_058

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8VS9|1|23S|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_058 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.3819

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8VS9|1|23S|C|1064
8VS9|1|23S|U|1065
8VS9|1|23S|U|1066
8VS9|1|23S|A|1067
8VS9|1|23S|G|1068
8VS9|1|23S|A|1069
8VS9|1|23S|A|1070
8VS9|1|23S|G|1071
8VS9|1|23S|C|1072
8VS9|1|23S|A|1073
8VS9|1|23S|G|1074

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L11

50S ribosomal protein L11