HL_8VS9_059

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_059 not in the Motif Atlas

Homologous match to HL_7RQB_030

Geometric discrepancy: 0.363

The information below is about HL_7RQB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|23S|C|1092
8VS9|1|23S|G|1093
8VS9|1|23S|U|1094
8VS9|1|23S|A|1095
8VS9|1|23S|A|1096
8VS9|1|23S|U|1097
8VS9|1|23S|A|1098
8VS9|1|23S|G|1099

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L06

50S ribosomal protein L6

Chain L11

50S ribosomal protein L11

Chain L36

50S ribosomal protein L36