HL_8VS9_063

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

8VS9|1|23S|U|1325, 8VS9|1|23S|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_063 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.1665

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8VS9|1|23S|G|1324
8VS9|1|23S|U|1325
8VS9|1|23S|U|1326
8VS9|1|23S|A|1327
8VS9|1|23S|A|1328
8VS9|1|23S|U|1329
8VS9|1|23S|C|1330

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L17

Large ribosomal subunit protein bL17

Chain L22

50S ribosomal protein L22