HL_8VS9_073

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

8VS9|1|23S|U|1729, 8VS9|1|23S|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_073 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.3326

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8VS9|1|23S|C|1727
8VS9|1|23S|C|1728
8VS9|1|23S|U|1729
8VS9|1|23S|C|1730
8VS9|1|23S|G|1731
8VS9|1|23S|C|1732
8VS9|1|23S|G|1733

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains