HL_8VS9_083

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8VS9|1|23S|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_083 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0924

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VS9|1|23S|C|2248
8VS9|1|23S|U|2249
8VS9|1|23S|G|2250
8VS9|1|23S|G|2251
8VS9|1|23S|G|2252
8VS9|1|23S|G|2253
8VS9|1|23S|C|2254
8VS9|1|23S|G|2255
8VS9|1|23S|G|2256

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L16

50S ribosomal protein L16

Chain L27

50S ribosomal protein L27

Chain TMRN

Transfer-messenger RNA; tmRNA