HL_8VS9_103
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUUGCACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VS9_103 not in the Motif Atlas
- Homologous match to HL_4YCO_002
- Geometric discrepancy: 0.1723
- The information below is about HL_4YCO_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8VS9|1|ATRN|C|31
8VS9|1|ATRN|U|32
8VS9|1|ATRN|U|33
8VS9|1|ATRN|U|34
8VS9|1|ATRN|G|35
8VS9|1|ATRN|C|36
8VS9|1|ATRN|A|37
8VS9|1|ATRN|C|38
8VS9|1|ATRN|G|39
Current chains
- Chain ATRN
- A-tRNA
Nearby chains
- Chain 16S
- Small subunit ribosomal RNA; SSU rRNA
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain S12
- 30S ribosomal protein S12
- Chain SMPB
- SsrA-binding protein
- Chain TMRN
- Transfer-messenger RNA; tmRNA
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