HL_8VS9_109
3D structure
- PDB id
- 8VS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGCUUAAUAACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VS9_109 not in the Motif Atlas
- Geometric match to HL_6JXM_001
- Geometric discrepancy: 0.3822
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
8VS9|1|TMRN|A|116
8VS9|1|TMRN|G|117
8VS9|1|TMRN|C|118
8VS9|1|TMRN|U|119
8VS9|1|TMRN|U|120
8VS9|1|TMRN|A|121
8VS9|1|TMRN|A|122
8VS9|1|TMRN|U|123
8VS9|1|TMRN|A|124
8VS9|1|TMRN|A|125
8VS9|1|TMRN|C|126
8VS9|1|TMRN|C|127
8VS9|1|TMRN|U|128
Current chains
- Chain TMRN
- TMRN
Nearby chains
- Chain 16S
- Small subunit ribosomal RNA; SSU rRNA
- Chain S02
- 30S ribosomal protein S2
- Chain S03
- 30S ribosomal protein S3
- Chain S05
- 30S ribosomal protein S5
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