HL_8VS9_110

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUCCGCUCUUAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_110 not in the Motif Atlas

Geometric match to HL_2A64_006

Geometric discrepancy: 0.3689

The information below is about HL_2A64_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38649.1

Basepair signature

cWW-tSH-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VS9|1|TMRN|C|152
8VS9|1|TMRN|U|153
8VS9|1|TMRN|C|154
8VS9|1|TMRN|C|155
8VS9|1|TMRN|G|156
8VS9|1|TMRN|C|157
8VS9|1|TMRN|U|158
8VS9|1|TMRN|C|159
8VS9|1|TMRN|U|160
8VS9|1|TMRN|U|161
8VS9|1|TMRN|A|162
8VS9|1|TMRN|G|163

Current chains

Chain TMRN

TMRN

Nearby chains