HL_8VS9_114

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

8VS9|1|16S|C|328, 8VS9|1|16S|C|330, 8VS9|1|16S|G|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_114 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.2186

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8VS9|1|16S|A|320
8VS9|1|16S|A|321
8VS9|1|16S|C|322
8VS9|1|16S|U|323
8VS9|1|16S|G|324
8VS9|1|16S|A|325
8VS9|1|16S|G|326
8VS9|1|16S|A|327
8VS9|1|16S|C|328
8VS9|1|16S|A|329
8VS9|1|16S|C|330
8VS9|1|16S|G|331
8VS9|1|16S|G|332
8VS9|1|16S|U|333

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S16

30S ribosomal protein S16

Chain S20

30S ribosomal protein S20