HL_8VS9_116

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

8VS9|1|23S|G|1452, 8VS9|1|23S|A|1453, 8VS9|1|23S|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VS9_116 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3059

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8VS9|1|23S|G|1450
8VS9|1|23S|C|1451
8VS9|1|23S|G|1452
8VS9|1|23S|A|1453
8VS9|1|23S|C|1454
8VS9|1|23S|G|1455
8VS9|1|23S|G|1456
8VS9|1|23S|U|1457
8VS9|1|23S|U|1458
8VS9|1|23S|G|1459
8VS9|1|23S|U|1460
8VS9|1|23S|C|1461

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L17

Large ribosomal subunit protein bL17