HL_8VSA_005

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8VSA|1|16S|U|209, 8VSA|1|16S|C|210

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_005 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3585

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8VSA|1|16S|C|207
8VSA|1|16S|U|208
8VSA|1|16S|U|209
8VSA|1|16S|C|210
8VSA|1|16S|G|211
8VSA|1|16S|G|212

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains