HL_8VSA_023

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_023 not in the Motif Atlas

Homologous match to HL_5J7L_023

Geometric discrepancy: 0.1146

The information below is about HL_5J7L_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8VSA|1|16S|U|1076
8VSA|1|16S|G|1077
8VSA|1|16S|U|1078
8VSA|1|16S|G|1079
8VSA|1|16S|A|1080
8VSA|1|16S|A|1081

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S02

30S ribosomal protein S2

Chain S05

30S ribosomal protein S5