HL_8VSA_028
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VSA_028 not in the Motif Atlas
- Homologous match to HL_5J7L_028
- Geometric discrepancy: 0.15
- The information below is about HL_5J7L_028
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8VSA|1|16S|C|1314
8VSA|1|16S|U|1315
8VSA|1|16S|G|1316
8VSA|1|16S|C|1317
8VSA|1|16S|A|1318
8VSA|1|16S|A|1319
8VSA|1|16S|C|1320
8VSA|1|16S|U|1321
8VSA|1|16S|C|1322
8VSA|1|16S|G|1323
Current chains
- Chain 16S
- 16S ribosomal RNA
Nearby chains
- Chain S13
- 30S ribosomal protein S13
- Chain S14
- Small ribosomal subunit protein uS14
- Chain S19
- 30S ribosomal protein S19
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