HL_8VSA_101
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAUGCCG
- Length
- 7 nucleotides
- Bulged bases
- 8VSA|1|5S|G|41
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VSA_101 not in the Motif Atlas
- Homologous match to HL_7A0S_069
- Geometric discrepancy: 0.544
- The information below is about HL_7A0S_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_59381.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8VSA|1|5S|C|38
8VSA|1|5S|A|39
8VSA|1|5S|U|40
8VSA|1|5S|G|41
8VSA|1|5S|C|42
8VSA|1|5S|C|43
8VSA|1|5S|G|44
Current chains
- Chain 5S
- 5S ribosomal RNA
Nearby chains
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain L05
- 50S ribosomal protein L5
- Chain L18
- 50S ribosomal protein L18
- Chain L31
- Large ribosomal subunit protein bL31
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