HL_8VSA_111
3D structure
- PDB id
- 8VSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUUCAACUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VSA_111 not in the Motif Atlas
- Homologous match to HL_4V8Q_110
- Geometric discrepancy: 0.4729
- The information below is about HL_4V8Q_110
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8VSA|1|TMRN|G|340
8VSA|1|TMRN|U|341
8VSA|1|TMRN|U|342
8VSA|1|TMRN|C|343
8VSA|1|TMRN|A|344
8VSA|1|TMRN|A|345
8VSA|1|TMRN|C|346
8VSA|1|TMRN|U|347
8VSA|1|TMRN|C|348
Current chains
- Chain TMRN
- TMRN
Nearby chains
- Chain 23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain L05
- 50S ribosomal protein L5
- Chain L16
- 50S ribosomal protein L16
- Chain SMPB
- SsrA-binding protein
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