HL_8VSA_116

3D structure

PDB id

8VSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCGCAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VSA_116 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.317

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8VSA|1|16S|G|378
8VSA|1|16S|C|379
8VSA|1|16S|G|380
8VSA|1|16S|C|381
8VSA|1|16S|A|382
8VSA|1|16S|A|383
8VSA|1|16S|G|384
8VSA|1|16S|C|385

Current chains

Chain 16S

16S ribosomal RNA

Nearby chains

Chain S16

30S ribosomal protein S16