HL_8VTU_075

3D structure

PDB id

8VTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

8VTU|1|1a|U|202, 8VTU|1|1a|U|204

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTU_075 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.2045

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.5

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

8VTU|1|1a|C|201
8VTU|1|1a|U|202
8VTU|1|1a|U|203
8VTU|1|1a|U|204
8VTU|1|1a|G|216

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains