HL_8VTU_194
3D structure
- PDB id
- 8VTU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-66, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- GCAGCC(G7M)C
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VTU_194 not in the Motif Atlas
- Geometric match to HL_2ZZN_004
- Geometric discrepancy: 0.1323
- The information below is about HL_2ZZN_004
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_64640.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8VTU|1|2a|G|521
8VTU|1|2a|C|522
8VTU|1|2a|A|523
8VTU|1|2a|G|524
8VTU|1|2a|C|525
8VTU|1|2a|C|526
8VTU|1|2a|G7M|527
8VTU|1|2a|C|528
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2c
- 30S ribosomal protein S3
- Chain 2l
- 30S ribosomal protein S12
- Chain 2v
- MF-mRNA
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