HL_8VTV_036

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

8VTV|1|1A|U|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTV_036 not in the Motif Atlas

Homologous match to HL_8VTW_036

Geometric discrepancy: 0.064

The information below is about HL_8VTW_036

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_08128.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VTV|1|1A|C|1451
8VTV|1|1A|A|1452
8VTV|1|1A|U|1453
8VTV|1|1A|G|1455
8VTV|1|1A|G|1456
8VTV|1|1A|A|1457
8VTV|1|1A|C|1458
8VTV|1|1A|G|1459

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1R

50S ribosomal protein L17