3D structure

PDB id
8VTV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
UUUACCAAAAA
Length
11 nucleotides
Bulged bases
8VTV|1|1A|A|1780, 8VTV|1|1A|C|1781, 8VTV|1|1A|C|1782, 8VTV|1|1A|A|1786
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VTV_044 not in the Motif Atlas
Homologous match to HL_8VTW_044
Geometric discrepancy: 0.0552
The information below is about HL_8VTW_044
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_43613.6
Basepair signature
cWW-tWH-tWH-F
Number of instances in this motif group
6

Unit IDs

8VTV|1|1A|U|1777
8VTV|1|1A|U|1778
8VTV|1|1A|U|1779
8VTV|1|1A|A|1780
8VTV|1|1A|C|1781
8VTV|1|1A|C|1782
8VTV|1|1A|A|1783
8VTV|1|1A|A|1784
8VTV|1|1A|A|1785
8VTV|1|1A|A|1786
8VTV|1|1A|A|1787

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 17
50S ribosomal protein L34
Chain 1D
50S ribosomal protein L2
Chain 1W
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5607 s
Application loaded.