3D structure

PDB id
8VTV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
CCUGCAAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8VTV_056 not in the Motif Atlas
Homologous match to HL_8VTW_056
Geometric discrepancy: 0.0508
The information below is about HL_8VTW_056
Detailed Annotation
GNRA with extra cWW
Broad Annotation
GNRA with extra cWW
Motif group
HL_82182.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
19

Unit IDs

8VTV|1|1A|C|2355
8VTV|1|1A|C|2356
8VTV|1|1A|U|2357
8VTV|1|1A|G|2358
8VTV|1|1A|C|2359
8VTV|1|1A|A|2360
8VTV|1|1A|A|2361
8VTV|1|1A|G|2362

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 10
50S ribosomal protein L27
Chain 18
50S ribosomal protein L35
Chain 1P
50S ribosomal protein L15

Coloring options:


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