HL_8VTV_065

3D structure

PDB id

8VTV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-91, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8VTV|1|1A|G|2751, 8VTV|1|1A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTV_065 not in the Motif Atlas

Homologous match to HL_8VTW_065

Geometric discrepancy: 0.0513

The information below is about HL_8VTW_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8VTV|1|1A|C|2745
8VTV|1|1A|U|2746
8VTV|1|1A|G|2747
8VTV|1|1A|A|2748
8VTV|1|1A|A|2749
8VTV|1|1A|A|2750
8VTV|1|1A|G|2751
8VTV|1|1A|C|2752
8VTV|1|1A|A|2753
8VTV|1|1A|U|2754
8VTV|1|1A|C|2755
8VTV|1|1A|U|2756
8VTV|1|1A|A|2757
8VTV|1|1A|A|2758
8VTV|1|1A|G|2759

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13