HL_8VTW_048

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases (A, C, G, U)

1955U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.2

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

8VTW|1|1A|G|1949
8VTW|1|1A|G|1950
8VTW|1|1A|U|1951
8VTW|1|1A|A|1952
8VTW|1|1A|A|1953
8VTW|1|1A|G|1954
8VTW|1|1A|U|1955
8VTW|1|1A|U|1956
8VTW|1|1A|C|1957

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1O

50S ribosomal protein L14

Chain 1a

Small subunit ribosomal RNA; SSU rRNA