HL_8VTW_060

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases (A, C, G, U)

2529G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.2

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

8VTW|1|1A|U|2528
8VTW|1|1A|G|2529
8VTW|1|1A|A|2530
8VTW|1|1A|A|2531
8VTW|1|1A|G|2532
8VTW|1|1A|A|2533
8VTW|1|1A|A|2534
8VTW|1|1A|G|2535

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6