HL_8VTW_126

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

8VTW|1|2A|U|827, 8VTW|1|2A|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTW_126 not in the Motif Atlas

Homologous match to HL_8VTW_024

Geometric discrepancy: 0.0468

The information below is about HL_8VTW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.2

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

8VTW|1|2A|U|826
8VTW|1|2A|U|827
8VTW|1|2A|U|828
8VTW|1|2A|A|829
8VTW|1|2A|G|830
8VTW|1|2A|G|831

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2P

50S ribosomal protein L15