HL_8VTW_138

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CAUGGACG

Length

8 nucleotides

Bulged bases

8VTW|1|2A|U|1453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTW_138 not in the Motif Atlas

Homologous match to HL_8VTW_036

Geometric discrepancy: 0.0605

The information below is about HL_8VTW_036

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_08128.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8VTW|1|2A|C|1451
8VTW|1|2A|A|1452
8VTW|1|2A|U|1453
8VTW|1|2A|G|1455
8VTW|1|2A|G|1456
8VTW|1|2A|A|1457
8VTW|1|2A|C|1458
8VTW|1|2A|G|1459

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2R

50S ribosomal protein L17