HL_8VTW_142

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8VTW|1|2A|A|1614, 8VTW|1|2A|A|1616, 8VTW|1|2A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTW_142 not in the Motif Atlas

Homologous match to HL_8VTW_039

Geometric discrepancy: 0.0402

The information below is about HL_8VTW_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8VTW|1|2A|C|1612
8VTW|1|2A|G|1613
8VTW|1|2A|A|1614
8VTW|1|2A|C|1615
8VTW|1|2A|A|1616
8VTW|1|2A|C|1617
8VTW|1|2A|A|1618
8VTW|1|2A|G|1619

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2W

50S ribosomal protein L22