HL_8VTW_147

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

8VTW|1|2A|A|1780, 8VTW|1|2A|C|1781, 8VTW|1|2A|C|1782, 8VTW|1|2A|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTW_147 not in the Motif Atlas

Homologous match to HL_8VTW_044

Geometric discrepancy: 0.0369

The information below is about HL_8VTW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8VTW|1|2A|U|1777
8VTW|1|2A|U|1778
8VTW|1|2A|U|1779
8VTW|1|2A|A|1780
8VTW|1|2A|C|1781
8VTW|1|2A|C|1782
8VTW|1|2A|A|1783
8VTW|1|2A|A|1784
8VTW|1|2A|A|1785
8VTW|1|2A|A|1786
8VTW|1|2A|A|1787

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2

Chain 2W

50S ribosomal protein L22