HL_8VTW_156

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

8VTW|1|2A|A|2268, 8VTW|1|2A|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTW_156 not in the Motif Atlas

Homologous match to HL_8VTW_053

Geometric discrepancy: 0.0376

The information below is about HL_8VTW_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8VTW|1|2A|C|2264
8VTW|1|2A|U|2265
8VTW|1|2A|A|2266
8VTW|1|2A|A|2267
8VTW|1|2A|A|2268
8VTW|1|2A|A|2269
8VTW|1|2A|G|2270
8VTW|1|2A|G|2271
8VTW|1|2A|U|2272
8VTW|1|2A|A|2273
8VTW|1|2A|A|2274
8VTW|1|2A|C|2275
8VTW|1|2A|G|2276

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 20

50S ribosomal protein L27

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25