HL_8VTX_023

3D structure

PDB id

8VTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with macrolone MCX-128, mRNA, aminoacylated A-site Phe-tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

8VTX|1|1A|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VTX_023 not in the Motif Atlas

Homologous match to HL_8VTW_023

Geometric discrepancy: 0.0308

The information below is about HL_8VTW_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8VTX|1|1A|U|779
8VTX|1|1A|G|780
8VTX|1|1A|A|781
8VTX|1|1A|A|782
8VTX|1|1A|A|783
8VTX|1|1A|A|784
8VTX|1|1A|G|785

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2